Variant report

Variant	rs1722226
Chromosome Location	chr7:101284247-101284248
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:101280631..101282500-chr7:101282807..101285513,2	MCF-7	breast:
2	chr7:101282674..101285001-chr7:101459487..101461440,2	MCF-7	breast:
3	chr7:101271746..101274112-chr7:101283361..101285535,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000106436	Chromatin interaction
ENSG00000257923	Chromatin interaction

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10239715	1.00[ASN][1000 genomes]
rs10269590	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10270145	1.00[ASN][1000 genomes]
rs10278534	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10447812	1.00[ASN][1000 genomes]
rs11772618	1.00[ASN][1000 genomes]
rs12667267	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1619382	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1636440	1.00[ASN][1000 genomes]
rs1636441	1.00[ASN][1000 genomes]
rs1636443	1.00[GIH][hapmap];1.00[ASN][1000 genomes]
rs1722218	1.00[ASN][1000 genomes]
rs1722224	1.00[GIH][hapmap];1.00[ASN][1000 genomes]
rs1722229	1.00[ASN][1000 genomes]
rs2529183	1.00[ASN][1000 genomes]
rs4263675	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4276617	1.00[ASN][1000 genomes]
rs4436052	1.00[ASN][1000 genomes]
rs4490765	1.00[ASN][1000 genomes]
rs4535653	1.00[ASN][1000 genomes]
rs4602818	1.00[ASN][1000 genomes]
rs4642556	1.00[ASN][1000 genomes]
rs4727503	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4727504	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4727505	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4727506	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4729747	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56381219	1.00[ASN][1000 genomes]
rs62466309	1.00[ASN][1000 genomes]
rs62466310	1.00[ASN][1000 genomes]
rs62466312	1.00[ASN][1000 genomes]
rs62466343	1.00[ASN][1000 genomes]
rs62466344	1.00[ASN][1000 genomes]
rs62466345	1.00[ASN][1000 genomes]
rs62466346	1.00[ASN][1000 genomes]
rs62466347	1.00[ASN][1000 genomes]
rs62466348	1.00[ASN][1000 genomes]
rs62466349	1.00[ASN][1000 genomes]
rs62466351	1.00[ASN][1000 genomes]
rs62466354	1.00[ASN][1000 genomes]
rs62466355	1.00[ASN][1000 genomes]
rs62466356	1.00[ASN][1000 genomes]
rs62466357	1.00[ASN][1000 genomes]
rs62466358	1.00[ASN][1000 genomes]
rs62467460	1.00[ASN][1000 genomes]
rs62467463	1.00[ASN][1000 genomes]
rs62467464	1.00[ASN][1000 genomes]
rs62467465	1.00[ASN][1000 genomes]
rs62467466	1.00[ASN][1000 genomes]
rs62467468	1.00[ASN][1000 genomes]
rs62467469	1.00[ASN][1000 genomes]
rs6957219	0.82[CEU][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6960571	1.00[ASN][1000 genomes]
rs757820	1.00[ASN][1000 genomes]
rs757821	1.00[GIH][hapmap];1.00[ASN][1000 genomes]
rs757822	1.00[ASN][1000 genomes]
rs757823	1.00[ASN][1000 genomes]
rs757824	1.00[ASN][1000 genomes]
rs7785622	1.00[ASN][1000 genomes]
rs7799319	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7809926	1.00[ASN][1000 genomes]
rs7811421	1.00[ASN][1000 genomes]
rs848644	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs848645	1.00[CEU][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs848646	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs848654	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933653	chr7:100701931-101515782	Active TSS ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv888821	chr7:101091470-101311540	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv888822	chr7:101105017-101330734	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv888824	chr7:101109073-101330734	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv888825	chr7:101168283-101330734	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1018544	chr7:101225639-101424889	Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv539045	chr7:101225639-101424889	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv482758	chr7:101231458-101395219	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv831079	chr7:101273495-101466776	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101280400-101288000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:101281000-101287800	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr7:101281000-101288000	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr7:101283200-101288200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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