Variant report

Variant	rs10239953
Chromosome Location	chr7:52668914-52668915
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10215679	0.89[ASN][1000 genomes]
rs10248738	0.85[ASN][1000 genomes]
rs10249844	0.85[ASN][1000 genomes]
rs10260750	0.85[ASN][1000 genomes]
rs10273637	0.87[ASN][1000 genomes]
rs10499705	0.85[ASN][1000 genomes]
rs13228752	0.89[ASN][1000 genomes]
rs13230804	0.85[ASN][1000 genomes]
rs1348246	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1372574	0.85[ASN][1000 genomes]
rs1372575	0.84[ASN][1000 genomes]
rs2222790	0.87[ASN][1000 genomes]
rs34372916	0.87[ASN][1000 genomes]
rs35247873	0.87[ASN][1000 genomes]
rs4947725	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs66696405	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7357263	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888026	chr7:52588348-53013671	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv888027	chr7:52588348-53190508	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:52668800-52670200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links