Variant report
| Variant | rs4947725 |
|---|---|
| Chromosome Location | chr7:52664164-52664165 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10215607 | 0.81[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs10239953 | 0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs11975332 | 0.81[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs11978808 | 0.81[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs12537787 | 0.81[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs12540233 | 0.81[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs12668178 | 0.81[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs12670614 | 0.81[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs12670627 | 0.81[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs12672814 | 0.81[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs12718696 | 0.81[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs1348245 | 0.82[ASN][1000 genomes] |
| rs1348246 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2330167 | 0.81[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs2330168 | 0.81[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs2330169 | 0.81[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs28719518 | 0.82[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs2877073 | 0.86[ASN][1000 genomes] |
| rs4538819 | 0.81[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs4947726 | 0.82[ASN][1000 genomes] |
| rs66696405 | 0.82[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs6967498 | 0.82[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs6976281 | 0.81[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs6980461 | 0.81[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs7357263 | 0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs7781305 | 0.82[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv888026 | chr7:52588348-53013671 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv888027 | chr7:52588348-53190508 | Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:52663400-52664400 | ZNF genes & repeats | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
