Variant report

Variant	rs11975332
Chromosome Location	chr7:52705065-52705066
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10215607	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10215679	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10248738	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10249844	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10257682	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10257932	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10258317	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10260750	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10261100	0.86[ASN][1000 genomes]
rs10273637	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10499705	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11238222	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11978808	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12154920	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12537787	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12540233	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12667401	0.88[ASN][1000 genomes]
rs12668178	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12670614	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12670627	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12671116	0.82[ASN][1000 genomes]
rs12672075	0.87[ASN][1000 genomes]
rs12672814	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12718696	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13228752	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13230804	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1348246	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1372574	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1372575	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2222790	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2330167	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2330168	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2330169	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28719518	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2877073	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34372916	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35247873	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4538819	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4947725	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs57870362	0.88[ASN][1000 genomes]
rs58164027	0.86[ASN][1000 genomes]
rs58217716	0.87[ASN][1000 genomes]
rs58625406	0.89[ASN][1000 genomes]
rs59281280	0.88[ASN][1000 genomes]
rs60450894	0.86[ASN][1000 genomes]
rs66696405	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6967498	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6976281	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6980461	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73338768	0.89[ASN][1000 genomes]
rs73338773	0.88[ASN][1000 genomes]
rs73338774	0.89[ASN][1000 genomes]
rs73338786	0.87[ASN][1000 genomes]
rs73338789	0.87[ASN][1000 genomes]
rs73338790	0.87[ASN][1000 genomes]
rs73338792	0.88[ASN][1000 genomes]
rs73338793	0.88[ASN][1000 genomes]
rs73338794	0.83[ASN][1000 genomes]
rs73338798	0.84[ASN][1000 genomes]
rs73338801	0.83[ASN][1000 genomes]
rs73340703	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888026	chr7:52588348-53013671	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv888027	chr7:52588348-53190508	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:52703000-52706800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:52703200-52706600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr7:52703200-52706600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr7:52703200-52706800	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr7:52703200-52706800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr7:52703200-52706800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr7:52703200-52706800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr7:52703400-52706400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr7:52703400-52706600	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr7:52703400-52706600	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr7:52703400-52706600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr7:52703400-52706800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr7:52703400-52706800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr7:52703400-52707800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr7:52704600-52706200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr7:52705000-52706800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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