Variant report

Variant	rs59281280
Chromosome Location	chr7:52744129-52744130
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10215607	0.88[ASN][1000 genomes]
rs10246509	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10248738	0.81[AMR][1000 genomes]
rs10257682	0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10257932	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10258317	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10260750	0.81[AMR][1000 genomes]
rs10261100	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10273637	0.81[AMR][1000 genomes]
rs10499705	0.84[AMR][1000 genomes]
rs11238222	0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11975332	0.88[ASN][1000 genomes]
rs11978808	0.86[ASN][1000 genomes]
rs12154920	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12537787	0.89[ASN][1000 genomes]
rs12540233	0.89[ASN][1000 genomes]
rs12667401	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12668178	0.88[ASN][1000 genomes]
rs12670614	0.88[ASN][1000 genomes]
rs12670627	0.88[ASN][1000 genomes]
rs12671116	0.92[ASN][1000 genomes]
rs12672075	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12672814	0.88[ASN][1000 genomes]
rs12718696	0.88[ASN][1000 genomes]
rs13230804	0.86[AMR][1000 genomes]
rs1372574	0.81[AMR][1000 genomes]
rs2222790	0.81[AMR][1000 genomes]
rs2330167	0.89[ASN][1000 genomes]
rs2330168	0.89[ASN][1000 genomes]
rs2330169	0.89[ASN][1000 genomes]
rs28719518	0.84[ASN][1000 genomes]
rs2877073	0.88[ASN][1000 genomes]
rs34372916	0.81[AMR][1000 genomes]
rs35247873	0.81[AMR][1000 genomes]
rs4538819	0.89[ASN][1000 genomes]
rs57870362	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58164027	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58217716	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58625406	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60450894	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6967498	0.87[ASN][1000 genomes]
rs6976281	0.88[ASN][1000 genomes]
rs6980461	0.88[ASN][1000 genomes]
rs73338768	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73338773	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73338774	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73338782	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73338786	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73338789	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73338790	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73338792	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73338793	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73338794	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73338798	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73338801	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73340703	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888026	chr7:52588348-53013671	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv888027	chr7:52588348-53190508	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1019211	chr7:52706930-52785302	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv606989	chr7:52722432-52748535	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv606990	chr7:52724902-52750565	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv17724	chr7:52730103-52745307	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv464446	chr7:52733291-52748535	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv464447	chr7:52733291-52748535	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv606992	chr7:52733291-52748535	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv606993	chr7:52733291-52750565	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv526376	chr7:52733528-52748535	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv464448	chr7:52733528-52752234	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv606994	chr7:52733528-52752234	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv606995	chr7:52733528-52757076	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv981771	chr7:52735792-52762504	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv2764055	chr7:52736727-52749772	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
17	esv3384735	chr7:52744108-52746381	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:52739800-52746200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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