Variant report

Variant	rs10240946
Chromosome Location	chr7:16490580-16490581
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10229444	0.82[ASN][1000 genomes]
rs10257743	1.00[MEX][hapmap]
rs10260275	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10267704	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs16878759	1.00[CEU][hapmap];0.85[CHB][hapmap];0.80[ASN][1000 genomes]
rs17169488	0.80[ASN][1000 genomes]
rs17169493	1.00[CEU][hapmap];0.85[CHB][hapmap];0.95[CHD][hapmap];1.00[MEX][hapmap];0.82[ASN][1000 genomes]
rs2301969	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs3763508	1.00[MEX][hapmap]
rs41477247	1.00[CEU][hapmap];0.85[CHB][hapmap];0.95[CHD][hapmap]
rs4721503	0.85[CHB][hapmap];0.95[CHD][hapmap];0.82[ASN][1000 genomes]
rs6945425	0.85[CHB][hapmap];0.89[CHD][hapmap]
rs73308344	0.82[ASN][1000 genomes]
rs7804353	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	esv2759514	chr7:16236162-16527390	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	esv2758105	chr7:16272822-16527390	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv1034151	chr7:16415497-16578081	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16488800-16490600	Enhancers	Muscle Satellite Cultured Cells	--
2	chr7:16489400-16492400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr7:16489600-16491000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr7:16490200-16490600	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr7:16490200-16490600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr7:16490200-16490600	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr7:16490200-16490600	Enhancers	HSMMtube	muscle
8	chr7:16490200-16490800	Enhancers	Brain Substantia Nigra	brain
9	chr7:16490400-16491000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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