Variant report

Variant	rs6945425
Chromosome Location	chr7:16505341-16505342
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:16505228..16507130-chr7:16509923..16512038,2	K562	blood:

Variant related genes	Relation type
ENSG00000272537	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10229444	0.90[ASN][1000 genomes]
rs16878759	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs17169488	0.87[ASN][1000 genomes]
rs17169493	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2301969	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2528478	0.85[YRI][hapmap];0.93[AFR][1000 genomes]
rs41477247	0.84[ASW][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4721503	0.89[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6971172	0.85[YRI][hapmap];0.93[AFR][1000 genomes]
rs73308344	0.90[ASN][1000 genomes]
rs7804353	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	esv2759514	chr7:16236162-16527390	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	esv2758105	chr7:16272822-16527390	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv1034151	chr7:16415497-16578081	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16501000-16511600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:16502200-16506000	Active TSS	Breast Myoepithelial Primary Cells	Breast
3	chr7:16502800-16506200	Active TSS	Fetal Stomach	stomach
4	chr7:16503000-16506000	Active TSS	Fetal Kidney	kidney
5	chr7:16503000-16506200	Active TSS	Duodenum Smooth Muscle	Duodenum
6	chr7:16503200-16505600	Active TSS	K562	blood
7	chr7:16503200-16505800	Active TSS	Rectal Mucosa Donor 31	rectum
8	chr7:16503200-16506000	Active TSS	Fetal Intestine Large	intestine
9	chr7:16503200-16506000	Active TSS	Fetal Muscle Leg	muscle
10	chr7:16503200-16506000	Active TSS	Rectal Mucosa Donor 29	rectum
11	chr7:16503200-16506000	Active TSS	Right Atrium	heart
12	chr7:16503400-16506000	Active TSS	Colon Smooth Muscle	Colon
13	chr7:16503400-16506000	Active TSS	Stomach Smooth Muscle	stomach
14	chr7:16503600-16506000	Active TSS	Fetal Intestine Small	intestine
15	chr7:16503600-16506000	Active TSS	Fetal Muscle Trunk	muscle
16	chr7:16503600-16506200	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr7:16503800-16506000	Active TSS	Rectal Smooth Muscle	rectum
18	chr7:16504000-16505400	Enhancers	NHEK	skin
19	chr7:16504000-16505800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr7:16504200-16506200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr7:16504800-16505400	Bivalent/Poised TSS	Stomach Mucosa	stomach
22	chr7:16504800-16505600	Active TSS	Brain Angular Gyrus	brain
23	chr7:16504800-16505800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
24	chr7:16504800-16505800	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
25	chr7:16504800-16505800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
26	chr7:16504800-16505800	Flanking Active TSS	Fetal Heart	heart
27	chr7:16504800-16506000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
28	chr7:16504800-16506000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr7:16504800-16506200	Flanking Active TSS	HMEC	breast
30	chr7:16505000-16505400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr7:16505000-16505400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr7:16505000-16505400	Enhancers	Cortex derived primary cultured neurospheres	brain
33	chr7:16505000-16505400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr7:16505000-16505400	Enhancers	Brain Anterior Caudate	brain
35	chr7:16505000-16505400	Flanking Active TSS	Fetal Brain Male	brain
36	chr7:16505000-16505400	Bivalent Enhancer	HUVEC	blood vessel
37	chr7:16505000-16505600	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr7:16505000-16505600	Active TSS	Fetal Adrenal Gland	Adrenal Gland
39	chr7:16505000-16505600	Active TSS	Gastric	stomach
40	chr7:16505000-16505800	Enhancers	H9 Cell Line	embryonic stem cell
41	chr7:16505000-16506000	Enhancers	H1 Cell Line	embryonic stem cell
42	chr7:16505000-16506000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
43	chr7:16505000-16506000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
44	chr7:16505000-16506000	Active TSS	Brain Inferior Temporal Lobe	brain
45	chr7:16505000-16506200	Active TSS	Fetal Brain Female	brain
46	chr7:16505200-16505400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr7:16505200-16505400	Flanking Active TSS	Primary hematopoietic stem cells	blood
48	chr7:16505200-16505400	Flanking Active TSS	Colonic Mucosa	Colon
49	chr7:16505200-16505400	Active TSS	Fetal Lung	lung
50	chr7:16505200-16505400	Active TSS	NH-A	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links