Variant report

Variant	rs2528478
Chromosome Location	chr7:16506602-16506603
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10238442	0.85[CEU][hapmap];0.87[EUR][1000 genomes]
rs10243969	0.89[EUR][1000 genomes]
rs10270805	0.85[CEU][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1921831	0.85[CEU][hapmap];0.87[EUR][1000 genomes]
rs2528468	0.89[EUR][1000 genomes]
rs2528475	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2528477	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs41477247	0.85[YRI][hapmap];0.89[AFR][1000 genomes]
rs6945425	0.85[YRI][hapmap];0.93[AFR][1000 genomes]
rs6971172	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs9791629	0.85[CEU][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	esv2759514	chr7:16236162-16527390	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	esv2758105	chr7:16272822-16527390	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv1034151	chr7:16415497-16578081	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16501000-16511600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:16505600-16508600	Weak transcription	Gastric	stomach
3	chr7:16506000-16511600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:16506000-16511600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr7:16506000-16511600	Weak transcription	Brain Angular Gyrus	brain
6	chr7:16506200-16506800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr7:16506200-16507200	Weak transcription	Fetal Kidney	kidney
8	chr7:16506200-16511600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr7:16506200-16511600	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr7:16506400-16511400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr7:16506400-16511600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr7:16506600-16511800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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