Variant report

Variant	rs10240961
Chromosome Location	chr7:128153138-128153139
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10241176	0.85[EUR][1000 genomes]
rs10273146	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11763357	0.84[EUR][1000 genomes]
rs12535956	0.85[EUR][1000 genomes]
rs13247422	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56403867	0.84[EUR][1000 genomes]
rs57185253	0.84[EUR][1000 genomes]
rs61310483	0.89[EUR][1000 genomes]
rs62481140	0.83[EUR][1000 genomes]
rs62481159	0.89[EUR][1000 genomes]
rs62483279	0.89[EUR][1000 genomes]
rs62483283	0.86[EUR][1000 genomes]
rs62483312	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1794896	chr7:128142170-128170380	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10240961	CICP14	cis	Thyroid	GTEx

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:128117800-128162800	Weak transcription	Pancreas	Pancrea
2	chr7:128117800-128163400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:128122000-128155400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr7:128122400-128156800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr7:128142200-128163200	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr7:128143600-128155400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr7:128143800-128160000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr7:128152000-128153200	Enhancers	K562	blood
9	chr7:128152600-128154800	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr7:128153000-128154600	Weak transcription	Monocytes-CD14+_RO01746	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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