Variant report

Variant	rs12535956
Chromosome Location	chr7:128149789-128149790
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10240961	0.85[EUR][1000 genomes]
rs10241176	0.81[EUR][1000 genomes]
rs10273146	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1048531	1.00[JPT][hapmap]
rs11763357	0.88[EUR][1000 genomes]
rs11766743	1.00[ASW][hapmap]
rs11769168	1.00[ASW][hapmap]
rs12534956	0.85[EUR][1000 genomes]
rs12540762	0.87[LWK][hapmap]
rs12540808	1.00[ASW][hapmap];0.87[LWK][hapmap]
rs13247422	0.94[EUR][1000 genomes]
rs17627068	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2060718	1.00[CEU][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.90[TSI][hapmap]
rs4500030	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56403867	0.88[EUR][1000 genomes]
rs57185253	0.88[EUR][1000 genomes]
rs58781928	0.81[EUR][1000 genomes]
rs59027033	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs59665775	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61310483	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62481129	0.87[ASN][1000 genomes]
rs62481131	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62481140	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62481159	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62481882	0.82[EUR][1000 genomes]
rs62481884	0.82[EUR][1000 genomes]
rs62481903	0.81[EUR][1000 genomes]
rs62483279	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62483283	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62483292	0.81[EUR][1000 genomes]
rs62483312	0.88[EUR][1000 genomes]
rs73463119	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1794896	chr7:128142170-128170380	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12535956	RP11-274B21.4	cis	Nerve Tibial	GTEx

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:128117800-128162800	Weak transcription	Pancreas	Pancrea
2	chr7:128117800-128163400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:128122000-128155400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr7:128122400-128156800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr7:128141600-128150600	Weak transcription	Fetal Brain Female	brain
6	chr7:128141800-128152000	Weak transcription	K562	blood
7	chr7:128142000-128150200	Weak transcription	Primary T cells from cord blood	blood
8	chr7:128142000-128151400	Weak transcription	Stomach Smooth Muscle	stomach
9	chr7:128142200-128152600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr7:128142200-128163200	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr7:128142400-128152200	Weak transcription	Duodenum Mucosa	Duodenum
12	chr7:128142600-128152000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr7:128142800-128152000	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr7:128143400-128151000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr7:128143600-128155400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr7:128143800-128160000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr7:128144000-128152000	Weak transcription	Adipose Nuclei	Adipose
18	chr7:128144600-128150600	Weak transcription	Fetal Intestine Small	intestine
19	chr7:128145000-128151400	Weak transcription	Fetal Stomach	stomach
20	chr7:128146000-128150200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
21	chr7:128146200-128151600	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr7:128148800-128151000	Weak transcription	Spleen	Spleen
23	chr7:128148800-128151600	Weak transcription	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links