Variant report

Variant	rs10241500
Chromosome Location	chr7:119655990-119655991
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10249750	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10256198	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10264638	0.81[AFR][1000 genomes]
rs10265645	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10268575	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10270053	0.88[AFR][1000 genomes]
rs10270748	0.91[AFR][1000 genomes]
rs10271700	0.83[AFR][1000 genomes]
rs2190092	0.83[AFR][1000 genomes]
rs28421683	0.88[AFR][1000 genomes]
rs6965513	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs6967227	0.83[AFR][1000 genomes]
rs73721037	0.90[AFR][1000 genomes]
rs7786155	0.87[AFR][1000 genomes]
rs7791125	0.83[AFR][1000 genomes]
rs7806016	0.86[AFR][1000 genomes]
rs9886003	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470388	chr7:119464310-119790102	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv2753623	chr7:119532049-119770049	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv831112	chr7:119585169-119776619	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv1799110	chr7:119638121-119658443	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1024054	chr7:119638121-119700508	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:119653400-119656400	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr7:119654400-119656400	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr7:119654800-119656400	Enhancers	H1 Cell Line	embryonic stem cell
4	chr7:119654800-119656400	Enhancers	H9 Cell Line	embryonic stem cell
5	chr7:119654800-119656400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr7:119654800-119656600	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr7:119654800-119656800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr7:119655200-119656200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr7:119655400-119656400	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr7:119655400-119656400	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr7:119655400-119656600	Enhancers	Brain Germinal Matrix	brain
12	chr7:119655400-119657400	Weak transcription	Ovary	ovary
13	chr7:119655800-119656200	Weak transcription	HUES48 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links