Variant report

Variant	rs7791125
Chromosome Location	chr7:119699900-119699901
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:119694731..119696428-chr7:119698965..119701883,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10241500	0.83[AFR][1000 genomes]
rs10249261	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs10249750	0.83[AFR][1000 genomes]
rs10256198	0.83[AFR][1000 genomes]
rs10264638	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10265645	0.83[AFR][1000 genomes]
rs10268575	0.83[AFR][1000 genomes]
rs10270053	0.86[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10270748	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10271700	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2190092	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2214762	0.84[AMR][1000 genomes]
rs28421683	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6963478	0.84[AMR][1000 genomes]
rs6963590	0.84[AMR][1000 genomes]
rs6965513	0.83[AFR][1000 genomes]
rs6967227	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721037	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7786155	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7806016	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9886003	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470388	chr7:119464310-119790102	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv2753623	chr7:119532049-119770049	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv831112	chr7:119585169-119776619	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv1024054	chr7:119638121-119700508	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv831113	chr7:119683515-119886277	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:119695600-119700000	Weak transcription	Adipose Nuclei	Adipose
2	chr7:119696000-119700000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr7:119696000-119700200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr7:119696000-119704200	Weak transcription	NHLF	lung
5	chr7:119696400-119700000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr7:119696800-119700000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr7:119699600-119701200	Enhancers	HSMMtube	muscle
8	chr7:119699800-119700000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr7:119699800-119700400	ZNF genes & repeats	Placenta	Placenta
10	chr7:119699800-119700800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr7:119699800-119700800	Enhancers	Muscle Satellite Cultured Cells	--
12	chr7:119699800-119700800	Enhancers	HSMM	muscle
13	chr7:119699800-119700800	Enhancers	Osteobl	bone
14	chr7:119699800-119701000	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr7:119699800-119701000	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr7:119699800-119701600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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