Variant report
| Variant | rs10241762 |
|---|---|
| Chromosome Location | chr7:14487830-14487831 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:14487713..14488501-chrX:20040447..20041022,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs10215373 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10239079 | 1.00[ASW][hapmap] |
| rs10263051 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10268451 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10272826 | 0.89[AFR][1000 genomes] |
| rs28427107 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28500753 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28579263 | 0.89[AFR][1000 genomes] |
| rs28729464 | 0.89[AFR][1000 genomes] |
| rs29001476 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59893344 | 0.87[AMR][1000 genomes] |
| rs6947664 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7786658 | 0.87[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949033 | chr7:14086106-14860323 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv915603 | chr7:14443884-14624268 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | esv1848567 | chr7:14464118-14579801 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv887707 | chr7:14471682-14576163 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:14487600-14488200 | Enhancers | Fetal Adrenal Gland | Adrenal Gland |
