Variant report

Variant	rs28500753
Chromosome Location	chr7:14479927-14479928
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10215373	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10241762	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10263051	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10268451	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10272826	0.89[AFR][1000 genomes]
rs28427107	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28579263	0.89[AFR][1000 genomes]
rs28729464	0.89[AFR][1000 genomes]
rs29001476	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59893344	0.87[AMR][1000 genomes]
rs6947664	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7786658	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv915603	chr7:14443884-14624268	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv1848567	chr7:14464118-14579801	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv887707	chr7:14471682-14576163	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14479800-14480400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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