Variant report

Variant	rs10242200
Chromosome Location	chr7:87781590-87781591
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10225853	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10238607	1.00[CHB][hapmap];0.90[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10281747	0.82[CHB][hapmap];0.91[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10441268	1.00[CHB][hapmap];0.91[JPT][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10952915	0.97[ASN][1000 genomes]
rs12535283	0.97[EUR][1000 genomes]
rs12537052	1.00[EUR][1000 genomes]
rs12538010	0.97[EUR][1000 genomes]
rs12704383	0.85[EUR][1000 genomes]
rs12704384	0.94[EUR][1000 genomes]
rs12704385	0.90[JPT][hapmap];0.88[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs12704386	1.00[CHB][hapmap];0.91[JPT][hapmap];0.81[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12704387	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13222429	0.94[EUR][1000 genomes]
rs13230365	0.85[EUR][1000 genomes]
rs13234177	0.85[EUR][1000 genomes]
rs13234922	0.85[EUR][1000 genomes]
rs13243228	0.97[EUR][1000 genomes]
rs17150232	0.88[EUR][1000 genomes]
rs17255978	0.97[EUR][1000 genomes]
rs2888581	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34957515	0.88[EUR][1000 genomes]
rs35345233	1.00[EUR][1000 genomes]
rs35532369	0.85[EUR][1000 genomes]
rs35549447	0.88[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs36004514	0.97[EUR][1000 genomes]
rs4320482	0.82[CHB][hapmap];0.91[JPT][hapmap];0.87[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs4728732	0.90[JPT][hapmap];0.86[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs726329	0.85[EUR][1000 genomes]
rs7457753	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7810342	1.00[CHB][hapmap];0.90[JPT][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015862	chr7:87075394-88049798	Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv1023352	chr7:87418818-88192925	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv539005	chr7:87418818-88192925	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv525073	chr7:87535096-87812968	Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv532148	chr7:87760675-88149417	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:87741200-87782600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr7:87762400-87782600	Weak transcription	GM12878-XiMat	blood
3	chr7:87767400-87796400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr7:87769200-87789200	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr7:87770800-87782400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr7:87770800-87784800	Weak transcription	Fetal Intestine Large	intestine
7	chr7:87771200-87782600	Weak transcription	Brain Angular Gyrus	brain
8	chr7:87773000-87788200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr7:87773200-87782400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr7:87773600-87786800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr7:87774000-87788600	Weak transcription	Primary T cells from cord blood	blood
12	chr7:87776000-87784400	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr7:87776200-87784800	Weak transcription	Adipose Nuclei	Adipose
14	chr7:87776200-87805600	Weak transcription	Fetal Brain Male	brain
15	chr7:87776200-87831600	Weak transcription	Left Ventricle	heart
16	chr7:87776400-87787600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr7:87776600-87788400	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr7:87777000-87782600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr7:87777400-87782400	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr7:87777600-87796200	Weak transcription	Brain Substantia Nigra	brain
21	chr7:87777800-87783800	Weak transcription	Fetal Kidney	kidney
22	chr7:87778000-87783000	Weak transcription	Right Ventricle	heart
23	chr7:87779200-87786800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr7:87779600-87782200	Weak transcription	Fetal Muscle Trunk	muscle
25	chr7:87779800-87782600	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr7:87780000-87782400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr7:87780600-87783200	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr7:87780800-87782400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr7:87781000-87782400	Weak transcription	Dnd41	blood
30	chr7:87781000-87783000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr7:87781000-87796200	Weak transcription	Brain Cingulate Gyrus	brain
32	chr7:87781000-87796200	Weak transcription	Brain Hippocampus Middle	brain
33	chr7:87781000-87796400	Weak transcription	Brain Anterior Caudate	brain
34	chr7:87781200-87782400	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr7:87781200-87782400	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr7:87781400-87782600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr7:87781400-87787200	Weak transcription	Fetal Lung	lung

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