Variant report

Variant	rs10281747
Chromosome Location	chr7:87801710-87801711
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:87801001..87803411-chr7:87803781..87806525,3	K562	blood:
2	chr7:87801001..87803364-chr7:87803781..87806525,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10225853	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10238607	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10242200	0.82[CHB][hapmap];0.91[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10441268	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10952915	0.92[ASN][1000 genomes]
rs12535283	0.97[EUR][1000 genomes]
rs12537052	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12538010	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs12704383	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs12704384	0.94[EUR][1000 genomes]
rs12704385	1.00[JPT][hapmap];0.85[YRI][hapmap];0.88[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs12704386	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12704387	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13222429	0.94[EUR][1000 genomes]
rs13230365	0.85[EUR][1000 genomes]
rs13234177	0.85[EUR][1000 genomes]
rs13234922	0.85[EUR][1000 genomes]
rs13243228	0.97[EUR][1000 genomes]
rs17150232	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs17255978	0.97[EUR][1000 genomes]
rs2888581	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34957515	0.88[EUR][1000 genomes]
rs35345233	1.00[EUR][1000 genomes]
rs35532369	0.85[EUR][1000 genomes]
rs35549447	0.88[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs36004514	0.97[EUR][1000 genomes]
rs4320482	1.00[JPT][hapmap];0.80[YRI][hapmap];0.88[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs4728732	1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs726329	0.85[EUR][1000 genomes]
rs7457753	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7810342	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015862	chr7:87075394-88049798	Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv1023352	chr7:87418818-88192925	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv539005	chr7:87418818-88192925	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv525073	chr7:87535096-87812968	Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv532148	chr7:87760675-88149417	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:87776200-87805600	Weak transcription	Fetal Brain Male	brain
2	chr7:87776200-87831600	Weak transcription	Left Ventricle	heart
3	chr7:87787400-87813600	Weak transcription	GM12878-XiMat	blood
4	chr7:87796800-87830200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr7:87799200-87815200	Weak transcription	Brain Anterior Caudate	brain
6	chr7:87799200-87815200	Weak transcription	Brain Cingulate Gyrus	brain
7	chr7:87801000-87832200	Weak transcription	Fetal Lung	lung

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