Variant report

Variant	rs10242365
Chromosome Location	chr7:140822171-140822172
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10252472	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10258028	0.87[AFR][1000 genomes]
rs10952447	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11979322	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17161916	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17161924	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17161926	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2270214	0.94[ASW][hapmap];0.94[CEU][hapmap];0.89[LWK][hapmap];0.95[MEX][hapmap];0.84[MKK][hapmap];0.90[TSI][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3336433	chr7:140783089-140892541	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv971546	chr7:140806435-140830923	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs10242365	TAS2R3	cis	cerebellum	SCAN
rs10242365	MKRN1	cis	parietal	SCAN
rs10242365	SVOPL	cis	cerebellum	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140816200-140823200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:140819000-140822200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr7:140819000-140822400	Weak transcription	Fetal Brain Male	brain
4	chr7:140819200-140832400	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr7:140819400-140832400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr7:140819400-140832400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr7:140821600-140822400	Enhancers	H9 Cell Line	embryonic stem cell
8	chr7:140821600-140823200	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr7:140822000-140822200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr7:140822000-140822200	Enhancers	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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