Variant report

Variant	rs11979322
Chromosome Location	chr7:140817667-140817668
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10242365	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10252472	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10952447	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17161916	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17161924	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17161926	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2270214	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3336433	chr7:140783089-140892541	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv971546	chr7:140806435-140830923	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140813200-140818200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr7:140813400-140818400	Weak transcription	Fetal Brain Male	brain
3	chr7:140815000-140821600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr7:140816000-140818000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr7:140816200-140818000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr7:140816200-140821000	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr7:140816200-140821600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr7:140816200-140823200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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