Variant report

Variant	rs10242754
Chromosome Location	chr7:27019688-27019689
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	7:27017279-27025474..7:27176959-27181770	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000254369	Chromatin interaction
ENSG00000105997	Chromatin interaction

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10227231	0.85[JPT][hapmap]
rs10227673	0.88[CHB][hapmap];0.84[JPT][hapmap]
rs10239608	0.88[CHB][hapmap]
rs10242572	0.84[JPT][hapmap]
rs10256250	0.85[JPT][hapmap]
rs10267950	0.85[JPT][hapmap]
rs10270187	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs10272190	0.85[JPT][hapmap]
rs10272457	0.85[JPT][hapmap]
rs10276471	0.85[JPT][hapmap]
rs10486483	0.88[CHB][hapmap];0.84[JPT][hapmap]
rs10486485	0.85[JPT][hapmap]
rs11563327	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12532796	0.85[JPT][hapmap]
rs12534899	0.88[CHB][hapmap];0.84[JPT][hapmap]
rs12535784	0.85[JPT][hapmap]
rs12536560	0.85[JPT][hapmap]
rs12537323	0.88[CHB][hapmap];0.84[JPT][hapmap]
rs12540388	0.84[JPT][hapmap]
rs1327988	0.88[CHB][hapmap];0.84[JPT][hapmap]
rs1327989	0.82[JPT][hapmap]
rs13438513	0.88[CHB][hapmap];0.84[JPT][hapmap]
rs13438514	0.88[CHB][hapmap];0.84[JPT][hapmap]
rs17315775	0.88[CHB][hapmap];0.84[JPT][hapmap]
rs17315929	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs17323934	0.88[CHB][hapmap];0.84[JPT][hapmap]
rs2030136	0.84[CHB][hapmap];0.85[JPT][hapmap]
rs2031811	0.84[JPT][hapmap]
rs2082365	0.88[CHB][hapmap]
rs2248744	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2253415	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2254463	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2391362	0.85[JPT][hapmap]
rs2428416	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2428417	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2428418	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2428431	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs2462902	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2465264	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2465266	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2465270	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2522824	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2693665	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2712234	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2712238	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2712242	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2712246	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3801803	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs3801805	0.85[JPT][hapmap]
rs3801807	0.88[CHB][hapmap];0.84[JPT][hapmap]
rs3801808	0.85[JPT][hapmap]
rs3801810	0.85[JPT][hapmap]
rs3801812	0.85[JPT][hapmap]
rs3801813	0.84[JPT][hapmap]
rs3801814	0.84[JPT][hapmap]
rs3801815	0.84[JPT][hapmap]
rs3801816	0.85[JPT][hapmap]
rs3801819	0.82[JPT][hapmap]
rs3801820	0.82[JPT][hapmap]
rs3801821	0.89[CHB][hapmap];0.85[JPT][hapmap]
rs3801825	0.85[JPT][hapmap]
rs3801827	0.85[JPT][hapmap]
rs3801828	0.84[JPT][hapmap]
rs3801830	0.85[JPT][hapmap]
rs3801840	0.82[JPT][hapmap]
rs3801842	0.85[JPT][hapmap]
rs3801843	0.88[CHB][hapmap]
rs3801844	0.88[CHB][hapmap];0.84[JPT][hapmap]
rs3801848	0.84[JPT][hapmap]
rs3801850	0.85[JPT][hapmap]
rs3823932	0.84[JPT][hapmap]
rs3823933	0.85[JPT][hapmap]
rs3823934	0.88[CHB][hapmap];0.84[JPT][hapmap]
rs3823936	1.00[JPT][hapmap]
rs6461979	0.84[JPT][hapmap]
rs6948657	0.85[JPT][hapmap]
rs7785832	0.85[JPT][hapmap]
rs7791513	0.84[JPT][hapmap]
rs7804356	0.88[CHB][hapmap];0.84[JPT][hapmap]
rs7805766	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
2	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
3	nsv1033272	chr7:26976426-27020206	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1018709	chr7:26990384-27216552	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	140 gene(s)	inside rSNPs	diseases
5	nsv538806	chr7:26990384-27216552	Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	140 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27005800-27029600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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