Variant report

Variant	rs10243698
Chromosome Location	chr7:140681119-140681120
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10271387	0.81[EUR][1000 genomes]
rs10279193	0.85[EUR][1000 genomes]
rs12534351	0.85[EUR][1000 genomes]
rs12534354	0.85[EUR][1000 genomes]
rs12538296	0.87[AFR][1000 genomes]
rs1860481	0.87[EUR][1000 genomes]
rs2079829	0.87[EUR][1000 genomes]
rs246738	0.87[EUR][1000 genomes]
rs246740	0.87[EUR][1000 genomes]
rs246741	0.87[EUR][1000 genomes]
rs246742	0.87[EUR][1000 genomes]
rs246743	0.81[EUR][1000 genomes]
rs3844322	0.85[EUR][1000 genomes]
rs4726134	0.81[EUR][1000 genomes]
rs4726136	0.91[EUR][1000 genomes]
rs6949856	0.87[EUR][1000 genomes]
rs6950813	0.85[EUR][1000 genomes]
rs7778860	0.85[EUR][1000 genomes]
rs7782666	0.87[EUR][1000 genomes]
rs9640306	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017980	chr7:140601863-140721368	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1030195	chr7:140615828-140746345	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv1026448	chr7:140636599-140716829	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	esv1797438	chr7:140666808-140682332	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10243698	TMEM178B	cis	Esophagus Mucosa	GTEx

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140677800-140681600	Weak transcription	Fetal Intestine Large	intestine
2	chr7:140678200-140681600	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr7:140680800-140683200	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr7:140681000-140681400	Weak transcription	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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