Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:140673174..140674792-chr7:140679004..140681718,2	MCF-7	breast:
2	chr7:140668526..140670352-chr7:140672310..140674813,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10243698	0.91[EUR][1000 genomes]
rs10271387	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10279193	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12534351	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12534354	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1860481	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2079829	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs246738	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs246740	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs246741	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs246742	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs246743	0.85[EUR][1000 genomes]
rs246744	0.83[EUR][1000 genomes]
rs3844322	0.93[EUR][1000 genomes]
rs4726134	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6949856	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6950813	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7778860	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7782666	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9640306	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017980	chr7:140601863-140721368	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1030195	chr7:140615828-140746345	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv1026448	chr7:140636599-140716829	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	esv1797438	chr7:140666808-140682332	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv520944	chr7:140673779-140679684	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4726136	TMEM178B	cis	Esophagus Mucosa	GTEx

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140673800-140675400	Weak transcription	Fetal Intestine Large	intestine
2	chr7:140673800-140675600	Weak transcription	Liver	Liver
3	chr7:140673800-140675600	Weak transcription	Placenta	Placenta
4	chr7:140674000-140675400	Weak transcription	Adipose Nuclei	Adipose
5	chr7:140674000-140675400	Weak transcription	Fetal Intestine Small	intestine
6	chr7:140674000-140675800	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr7:140674200-140674800	Weak transcription	HepG2	liver

Quick Search: