Variant report

Variant	rs10244261
Chromosome Location	chr7:77985992-77985993
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1990369	0.85[YRI][hapmap];0.85[AFR][1000 genomes]
rs6944806	0.97[EUR][1000 genomes]
rs6957204	0.89[YRI][hapmap];0.90[AFR][1000 genomes]
rs6959463	0.96[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs714437	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7783086	0.82[YRI][hapmap]
rs9791992	0.82[YRI][hapmap];0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv607654	chr7:77537964-78014329	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:77953600-77986600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:77972800-78001200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr7:77975600-77992000	Weak transcription	Ovary	ovary
4	chr7:77979800-77986800	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr7:77980000-77986400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr7:77981600-77994400	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr7:77982000-77990000	Weak transcription	Brain Angular Gyrus	brain
8	chr7:77982200-77986600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr7:77985400-77989400	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr7:77985600-77998200	Weak transcription	Brain Substantia Nigra	brain
11	chr7:77985800-77989200	Weak transcription	Fetal Heart	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links