Variant report

Variant	rs1990369
Chromosome Location	chr7:77996068-77996069
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10244261	0.85[YRI][hapmap];0.85[AFR][1000 genomes]
rs13223430	0.83[CEU][hapmap]
rs1541483	0.87[JPT][hapmap]
rs17349903	0.88[CEU][hapmap];0.80[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs2068892	0.84[CEU][hapmap];0.90[CHB][hapmap];0.89[JPT][hapmap]
rs2191324	0.84[CEU][hapmap];0.90[CHB][hapmap];0.89[JPT][hapmap]
rs2191326	0.88[CEU][hapmap];0.93[GIH][hapmap];0.85[LWK][hapmap];0.91[MKK][hapmap];0.95[TSI][hapmap];0.82[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs6957204	1.00[ASW][hapmap];0.84[CEU][hapmap];0.85[CHD][hapmap];0.93[GIH][hapmap];0.91[LWK][hapmap];0.91[MEX][hapmap];0.97[MKK][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6959463	0.85[YRI][hapmap];0.83[AFR][1000 genomes]
rs714437	0.93[GIH][hapmap]
rs7783086	1.00[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.94[MKK][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7784121	0.88[CEU][hapmap];0.93[GIH][hapmap];0.85[LWK][hapmap];0.94[MKK][hapmap];0.91[TSI][hapmap];0.80[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs7801594	0.87[CEU][hapmap];0.80[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs9640699	0.84[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap]
rs9791992	0.80[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv607654	chr7:77537964-78014329	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:77972800-78001200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr7:77985600-77998200	Weak transcription	Brain Substantia Nigra	brain
3	chr7:77993800-78001200	Weak transcription	Brain Anterior Caudate	brain
4	chr7:77994800-78000400	Weak transcription	Brain Inferior Temporal Lobe	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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