Variant report

Variant	rs17349903
Chromosome Location	chr7:78019596-78019597
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1005269	0.83[CEU][hapmap];0.92[CHB][hapmap]
rs10231406	0.83[CEU][hapmap];0.92[CHB][hapmap]
rs10260692	0.83[CEU][hapmap];0.92[CHB][hapmap]
rs10265453	0.83[CEU][hapmap];0.92[CHB][hapmap]
rs13223430	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs17150656	0.85[CEU][hapmap];0.92[CHB][hapmap]
rs1990369	0.88[CEU][hapmap];0.80[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs2191326	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2191327	0.82[CEU][hapmap]
rs6466179	0.85[CEU][hapmap];0.92[CHB][hapmap]
rs6957204	0.84[EUR][1000 genomes]
rs7781496	0.92[CHB][hapmap];0.82[JPT][hapmap]
rs7783086	0.89[CEU][hapmap];0.95[EUR][1000 genomes]
rs7784121	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7789774	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs7795420	0.85[CEU][hapmap];0.92[CHB][hapmap]
rs7801594	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7810778	0.85[CEU][hapmap];0.92[CHB][hapmap]
rs9791992	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1033518	chr7:78013657-78038797	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78010000-78024600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:78015800-78028600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:78016200-78022600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr7:78016200-78022600	Weak transcription	Right Atrium	heart
5	chr7:78016200-78022800	Weak transcription	Brain Substantia Nigra	brain
6	chr7:78017400-78029800	Weak transcription	Aorta	Aorta
7	chr7:78018800-78022800	Weak transcription	Brain Hippocampus Middle	brain
8	chr7:78018800-78023800	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr7:78018800-78024400	Weak transcription	Brain Anterior Caudate	brain
10	chr7:78019000-78023600	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr7:78019000-78023800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr7:78019000-78023800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr7:78019000-78026600	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr7:78019000-78026800	Weak transcription	H1 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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