Variant report

Variant	rs2191326
Chromosome Location	chr7:78013732-78013733
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:78005645..78007529-chr7:78013628..78016118,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1005269	0.85[CEU][hapmap];0.92[CHB][hapmap]
rs10231406	0.85[CEU][hapmap];0.92[CHB][hapmap]
rs10260692	0.85[CEU][hapmap];0.92[CHB][hapmap]
rs10265453	0.85[CEU][hapmap];0.92[CHB][hapmap]
rs13223430	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]
rs17150656	0.85[CEU][hapmap];0.92[CHB][hapmap]
rs17349903	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1990369	0.88[CEU][hapmap];0.93[GIH][hapmap];0.85[LWK][hapmap];0.91[MKK][hapmap];0.95[TSI][hapmap];0.82[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs2191327	0.82[CEU][hapmap]
rs6466179	0.85[CEU][hapmap];0.92[CHB][hapmap]
rs6957204	0.87[GIH][hapmap];0.93[MKK][hapmap];0.98[TSI][hapmap];0.84[EUR][1000 genomes]
rs714437	0.81[CHD][hapmap];0.87[GIH][hapmap]
rs7781496	0.92[CHB][hapmap];0.82[JPT][hapmap]
rs7783086	0.89[CEU][hapmap];0.91[LWK][hapmap];0.91[MKK][hapmap];0.98[TSI][hapmap];0.95[EUR][1000 genomes]
rs7784121	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7789774	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs7795420	0.85[CEU][hapmap];0.92[CHB][hapmap]
rs7801594	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7807494	0.81[CEU][hapmap]
rs7810778	0.85[CEU][hapmap];0.92[CHB][hapmap]
rs9791992	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv607654	chr7:77537964-78014329	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1033518	chr7:78013657-78038797	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78010000-78024600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:78012200-78018600	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr7:78013000-78014200	Weak transcription	Brain Substantia Nigra	brain
4	chr7:78013200-78014000	Weak transcription	Brain Cingulate Gyrus	brain

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