Variant report

Variant	rs7807494
Chromosome Location	chr7:78029798-78029799
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:78028994..78032808-chr7:78037424..78041086,3	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1005269	0.93[CEU][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10231406	0.93[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10234248	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10234367	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10237959	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10260692	0.93[CEU][hapmap];0.84[YRI][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10265453	0.93[CEU][hapmap];0.83[YRI][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10272154	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10281742	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10281997	1.00[JPT][hapmap];0.86[YRI][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12540636	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13223430	0.84[CEU][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16886001	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17150618	0.84[EUR][1000 genomes]
rs17150625	0.86[JPT][hapmap]
rs17150638	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17150651	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17150656	0.96[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2058279	0.84[EUR][1000 genomes]
rs2068892	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs2191324	0.82[CEU][hapmap];0.84[EUR][1000 genomes]
rs2191326	0.81[CEU][hapmap]
rs2191327	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2215378	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28571911	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28613654	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28752122	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62468258	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6466170	0.84[EUR][1000 genomes]
rs6466176	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6466177	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6466179	0.96[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6967651	0.95[ASN][1000 genomes]
rs7781496	0.85[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7784121	0.81[CEU][hapmap]
rs7789307	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7789774	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7794948	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7795420	0.96[CEU][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7810778	0.96[CEU][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9640699	0.85[CEU][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1033518	chr7:78013657-78038797	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78017400-78029800	Weak transcription	Aorta	Aorta
2	chr7:78023000-78047200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr7:78024200-78035600	Weak transcription	Brain Angular Gyrus	brain
4	chr7:78026800-78031400	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr7:78027400-78030000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr7:78027600-78032200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr7:78027800-78031800	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr7:78028000-78032000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr7:78028400-78029800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr7:78028400-78031200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr7:78028400-78031800	Enhancers	Fetal Heart	heart
12	chr7:78029000-78030000	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr7:78029000-78030000	Weak transcription	Ovary	ovary
14	chr7:78029000-78030600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr7:78029000-78034800	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr7:78029000-78045000	Weak transcription	Brain Anterior Caudate	brain
17	chr7:78029000-78045200	Weak transcription	Brain Substantia Nigra	brain
18	chr7:78029200-78030600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
19	chr7:78029400-78029800	Active TSS	iPS-20b Cell Line	embryonic stem cell
20	chr7:78029400-78030800	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr7:78029400-78031400	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr7:78029400-78031600	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr7:78029600-78044400	Weak transcription	Brain Cingulate Gyrus	brain

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