Variant report

Variant	rs2058279
Chromosome Location	chr7:77995072-77995073
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1005269	0.92[EUR][1000 genomes]
rs10231406	0.94[EUR][1000 genomes]
rs10234248	0.90[EUR][1000 genomes]
rs10234367	0.90[EUR][1000 genomes]
rs10237959	0.88[EUR][1000 genomes]
rs10260692	0.93[EUR][1000 genomes]
rs10265453	0.93[EUR][1000 genomes]
rs10272154	0.86[EUR][1000 genomes]
rs10281742	0.90[EUR][1000 genomes]
rs10281997	0.90[EUR][1000 genomes]
rs12540636	0.94[EUR][1000 genomes]
rs13223430	0.92[EUR][1000 genomes]
rs16886001	0.93[EUR][1000 genomes]
rs17150618	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17150638	0.94[EUR][1000 genomes]
rs17150651	0.93[EUR][1000 genomes]
rs17150656	0.93[EUR][1000 genomes]
rs2068892	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2191324	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2191327	0.86[EUR][1000 genomes]
rs2215378	0.84[EUR][1000 genomes]
rs28571911	0.94[EUR][1000 genomes]
rs28613654	0.94[EUR][1000 genomes]
rs28752122	0.93[EUR][1000 genomes]
rs62468258	0.87[EUR][1000 genomes]
rs6466170	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6466176	0.94[EUR][1000 genomes]
rs6466177	0.94[EUR][1000 genomes]
rs6466179	0.93[EUR][1000 genomes]
rs6944806	0.87[AFR][1000 genomes]
rs7781496	0.94[EUR][1000 genomes]
rs7789307	0.94[EUR][1000 genomes]
rs7789774	0.94[EUR][1000 genomes]
rs7794948	0.93[EUR][1000 genomes]
rs7795420	0.93[EUR][1000 genomes]
rs7807494	0.84[EUR][1000 genomes]
rs7810778	0.93[EUR][1000 genomes]
rs9640699	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv607654	chr7:77537964-78014329	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:77972800-78001200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr7:77985600-77998200	Weak transcription	Brain Substantia Nigra	brain
3	chr7:77993800-78001200	Weak transcription	Brain Anterior Caudate	brain
4	chr7:77994800-78000400	Weak transcription	Brain Inferior Temporal Lobe	brain

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