Variant report

Variant	rs10244538
Chromosome Location	chr7:79755736-79755737
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10236183	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10266446	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10277713	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10486926	0.81[EUR][1000 genomes]
rs12530885	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12706640	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17153463	0.86[EUR][1000 genomes]
rs2015430	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2078181	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35290068	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4731234	0.81[EUR][1000 genomes]
rs717114	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs717115	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7458626	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1027494	chr7:79693976-79760332	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79749000-79756600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:79754200-79756000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr7:79754200-79756200	Weak transcription	Brain Angular Gyrus	brain
4	chr7:79754400-79755800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr7:79754400-79758800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr7:79754400-79762000	Weak transcription	Fetal Thymus	thymus
7	chr7:79754600-79755800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr7:79754600-79757200	Weak transcription	Dnd41	blood
9	chr7:79754600-79758000	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr7:79754600-79758200	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr7:79755200-79758600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr7:79755400-79758400	Enhancers	Brain Anterior Caudate	brain
13	chr7:79755400-79758600	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr7:79755600-79755800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr7:79755600-79757400	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
16	chr7:79755600-79758000	Enhancers	Brain Substantia Nigra	brain
17	chr7:79755600-79758200	Enhancers	Brain Hippocampus Middle	brain
18	chr7:79755600-79758600	Enhancers	Brain Cingulate Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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