Variant report

Variant	rs17153463
Chromosome Location	chr7:79748947-79748948
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10236183	0.92[EUR][1000 genomes]
rs10244538	0.86[EUR][1000 genomes]
rs10266446	0.92[EUR][1000 genomes]
rs10277713	0.81[EUR][1000 genomes]
rs10486926	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12530885	0.86[EUR][1000 genomes]
rs12669091	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12706640	0.84[EUR][1000 genomes]
rs2015430	0.89[EUR][1000 genomes]
rs2078181	0.86[EUR][1000 genomes]
rs35290068	0.87[EUR][1000 genomes]
rs717114	0.86[EUR][1000 genomes]
rs717115	0.86[EUR][1000 genomes]
rs7458626	0.85[EUR][1000 genomes]
rs886364	0.83[ASN][1000 genomes]
rs9641749	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1027494	chr7:79693976-79760332	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17153463	GNAI1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79744200-79755600	Weak transcription	Brain Cingulate Gyrus	brain
2	chr7:79744400-79752200	Weak transcription	Brain Substantia Nigra	brain
3	chr7:79747200-79752800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr7:79748000-79749000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr7:79748800-79749000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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