Variant report

Variant	rs1024457
Chromosome Location	chr7:86764142-86764143
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:86760460..86762904-chr7:86763165..86765693,2	MCF-7	breast:
2	chr7:86763222..86765945-chr7:86765955..86768293,2	K562	blood:
3	chr7:86763545..86768388-chr7:86768445..86771440,6	K562	blood:
4	chr7:86746755..86750570-chr7:86763189..86766191,3	K562	blood:
5	chr7:86688873..86691091-chr7:86764081..86766631,2	K562	blood:
6	chr7:86730349..86731920-chr7:86762742..86764645,2	K562	blood:

Variant related genes	Relation type
ENSG00000164659	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10085726	1.00[CEU][hapmap];0.91[YRI][hapmap];0.90[EUR][1000 genomes]
rs10228392	1.00[CEU][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10231010	0.91[EUR][1000 genomes]
rs10238917	0.92[EUR][1000 genomes]
rs10244350	0.89[CEU][hapmap]
rs10257953	1.00[CEU][hapmap];0.95[YRI][hapmap];0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10273853	0.89[CEU][hapmap]
rs10952896	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17698411	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs17766011	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1859125	0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1859126	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1859127	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1859128	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1981536	0.88[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2057984	1.00[CEU][hapmap];0.91[YRI][hapmap];0.86[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs2074757	1.00[CEU][hapmap];0.95[YRI][hapmap];1.00[EUR][1000 genomes]
rs2106955	0.81[ASN][1000 genomes]
rs2108271	1.00[CEU][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2108272	1.00[CEU][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2190424	1.00[CEU][hapmap];0.95[YRI][hapmap];0.91[EUR][1000 genomes]
rs2286268	1.00[CEU][hapmap];0.95[YRI][hapmap];0.91[EUR][1000 genomes]
rs2373387	1.00[CEU][hapmap];0.86[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2373388	1.00[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2373389	0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs3747807	1.00[CEU][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3789251	1.00[CEU][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3789252	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs4140847	1.00[CEU][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4400318	0.87[EUR][1000 genomes]
rs4639442	0.85[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs4727146	0.87[EUR][1000 genomes]
rs4728686	1.00[CEU][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4728689	1.00[CEU][hapmap];0.91[YRI][hapmap];0.90[EUR][1000 genomes]
rs56327053	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6465092	0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6465093	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6465101	0.87[EUR][1000 genomes]
rs6952384	0.87[EUR][1000 genomes]
rs6958626	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6958797	0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6959152	0.81[CEU][hapmap];0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6968640	0.90[CEU][hapmap]
rs6975202	0.87[EUR][1000 genomes]
rs739711	0.88[AMR][1000 genomes]
rs739712	0.88[AMR][1000 genomes]
rs744136	0.88[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs757961	1.00[CEU][hapmap];0.91[YRI][hapmap];0.90[EUR][1000 genomes]
rs765968	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7780698	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs7782008	0.83[AMR][1000 genomes]
rs7810647	1.00[CEU][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs886318	0.88[AMR][1000 genomes]
rs886787	1.00[CEU][hapmap];0.91[YRI][hapmap];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025277	chr7:86299224-87206007	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv538999	chr7:86299224-87206007	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv532147	chr7:86299225-87121975	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	nsv1015870	chr7:86490491-86802320	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
5	nsv539000	chr7:86490491-86802320	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
6	nsv527889	chr7:86496042-86832603	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
7	nsv1028503	chr7:86684514-86778047	Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1033834	chr7:86691235-86770796	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv539002	chr7:86691235-86770796	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv1023137	chr7:86725145-86767689	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv1016761	chr7:86758544-86914152	Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:86763400-86766800	Weak transcription	K562	blood
2	chr7:86763800-86768800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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