Variant report

Variant	rs2106955
Chromosome Location	chr7:86762349-86762350
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:86760460..86762904-chr7:86763165..86765693,2	MCF-7	breast:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1011952	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1011953	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1024457	0.81[ASN][1000 genomes]
rs10245036	0.89[EUR][1000 genomes]
rs10263920	0.98[EUR][1000 genomes]
rs10273826	0.85[EUR][1000 genomes]
rs1058972	0.98[EUR][1000 genomes]
rs1558050	0.96[EUR][1000 genomes]
rs1574795	0.84[EUR][1000 genomes]
rs17698411	0.83[ASN][1000 genomes]
rs17766011	0.83[ASN][1000 genomes]
rs1859125	0.83[ASN][1000 genomes]
rs1859126	0.82[ASN][1000 genomes]
rs1859127	0.82[ASN][1000 genomes]
rs1859128	0.82[ASN][1000 genomes]
rs1981536	0.81[ASN][1000 genomes]
rs2286267	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2373389	0.83[ASN][1000 genomes]
rs3810883	0.88[EUR][1000 genomes]
rs4236504	0.99[EUR][1000 genomes]
rs4728685	0.98[EUR][1000 genomes]
rs56327053	0.83[ASN][1000 genomes]
rs6465092	0.83[ASN][1000 genomes]
rs6465099	0.87[EUR][1000 genomes]
rs6465100	0.84[EUR][1000 genomes]
rs6942878	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6952842	0.98[EUR][1000 genomes]
rs6957785	0.99[EUR][1000 genomes]
rs6958626	0.82[ASN][1000 genomes]
rs6958797	0.83[ASN][1000 genomes]
rs6959152	0.83[ASN][1000 genomes]
rs6975175	0.84[EUR][1000 genomes]
rs6978590	0.88[EUR][1000 genomes]
rs739711	0.81[ASN][1000 genomes]
rs739712	0.81[ASN][1000 genomes]
rs744136	0.81[ASN][1000 genomes]
rs757159	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs769156	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7776634	0.94[EUR][1000 genomes]
rs7782008	0.81[ASN][1000 genomes]
rs7792031	0.92[EUR][1000 genomes]
rs7793356	0.96[EUR][1000 genomes]
rs7800541	0.96[EUR][1000 genomes]
rs7812191	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs886318	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025277	chr7:86299224-87206007	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv538999	chr7:86299224-87206007	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv532147	chr7:86299225-87121975	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	nsv1015870	chr7:86490491-86802320	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
5	nsv539000	chr7:86490491-86802320	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
6	nsv527889	chr7:86496042-86832603	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
7	nsv1028503	chr7:86684514-86778047	Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1033834	chr7:86691235-86770796	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv539002	chr7:86691235-86770796	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv1023137	chr7:86725145-86767689	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv1016761	chr7:86758544-86914152	Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:86759000-86763200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr7:86759000-86763400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr7:86760400-86763000	Weak transcription	K562	blood
4	chr7:86760600-86763200	Weak transcription	GM12878-XiMat	blood
5	chr7:86762000-86763400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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