Variant report

Variant	rs6942878
Chromosome Location	chr7:86771338-86771339
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:86553017..86554703-chr7:86769615..86772464,2	K562	blood:
2	chr7:86763545..86768388-chr7:86768445..86771440,6	K562	blood:
3	chr7:86688083..86692094-chr7:86768272..86771491,3	K562	blood:
4	chr7:86653737..86655666-chr7:86769659..86772034,2	K562	blood:
5	chr7:86731060..86733031-chr7:86768713..86771347,2	K562	blood:
6	chr7:86769920..86772245-chr7:86843522..86846267,2	K562	blood:
7	chr7:86743955..86746564-chr7:86769711..86772412,2	K562	blood:
8	chr7:86756889..86761980-chr7:86767271..86772567,7	K562	blood:
9	chr7:86758328..86759848-chr7:86769436..86771788,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000135185	Chromatin interaction
ENSG00000164659	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1011952	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1011953	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10245036	0.90[EUR][1000 genomes]
rs10263920	0.98[EUR][1000 genomes]
rs10273826	0.85[EUR][1000 genomes]
rs1058972	0.98[EUR][1000 genomes]
rs1558050	0.97[EUR][1000 genomes]
rs1574795	0.85[EUR][1000 genomes]
rs2106955	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2286267	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3810883	0.88[EUR][1000 genomes]
rs4236504	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4728685	0.98[EUR][1000 genomes]
rs6465099	0.88[EUR][1000 genomes]
rs6465100	0.85[EUR][1000 genomes]
rs6952842	0.98[EUR][1000 genomes]
rs6957785	1.00[EUR][1000 genomes]
rs6975175	0.85[EUR][1000 genomes]
rs6978590	0.89[EUR][1000 genomes]
rs757159	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs769156	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7776634	0.95[EUR][1000 genomes]
rs7792031	0.93[EUR][1000 genomes]
rs7793356	0.97[EUR][1000 genomes]
rs7800541	0.97[EUR][1000 genomes]
rs7812191	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025277	chr7:86299224-87206007	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv538999	chr7:86299224-87206007	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv532147	chr7:86299225-87121975	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	nsv1015870	chr7:86490491-86802320	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
5	nsv539000	chr7:86490491-86802320	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
6	nsv527889	chr7:86496042-86832603	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
7	nsv1028503	chr7:86684514-86778047	Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1016761	chr7:86758544-86914152	Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
9	esv1793812	chr7:86765464-86771666	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:86769800-86771400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr7:86770000-86773200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr7:86770200-86773400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr7:86770200-86773400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr7:86770200-86774000	Enhancers	K562	blood
6	chr7:86771000-86772600	Weak transcription	GM12878-XiMat	blood
7	chr7:86771000-86773200	Weak transcription	Fetal Intestine Small	intestine
8	chr7:86771000-86780800	Weak transcription	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links