Variant report

Variant	rs769156
Chromosome Location	chr7:86758544-86758545
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:86704472..86706406-chr7:86758436..86761205,2	K562	blood:
2	chr7:86758520..86760252-chr7:86782060..86784571,2	K562	blood:
3	chr7:86756031..86760604-chr7:86784730..86788894,5	K562	blood:
4	chr7:86740834..86746276-chr7:86753431..86758713,6	K562	blood:
5	chr7:86758328..86759848-chr7:86769436..86771788,2	K562	blood:
6	chr7:86757205..86760252-chr7:86779952..86783560,4	K562	blood:
7	chr7:86756765..86759432-chr7:86785512..86787976,2	K562	blood:
8	chr7:86756889..86761980-chr7:86767271..86772567,7	K562	blood:
9	chr7:86757924..86761647-chr7:86780561..86782900,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000135164	Chromatin interaction
ENSG00000224046	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1011952	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1011953	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10245036	1.00[CEU][hapmap];0.83[TSI][hapmap];0.86[EUR][1000 genomes]
rs10263920	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs10273826	0.94[CEU][hapmap];0.82[EUR][1000 genomes]
rs1058972	1.00[CEU][hapmap];0.86[TSI][hapmap];0.94[EUR][1000 genomes]
rs1558050	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs1574795	0.94[CEU][hapmap];0.82[EUR][1000 genomes]
rs17766292	0.85[JPT][hapmap]
rs1859125	0.84[JPT][hapmap]
rs2106955	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2286267	1.00[CEU][hapmap];0.89[TSI][hapmap];0.96[EUR][1000 genomes]
rs3810883	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs4236504	1.00[CEU][hapmap];0.93[TSI][hapmap];0.96[EUR][1000 genomes]
rs4728685	0.94[EUR][1000 genomes]
rs6465099	0.84[EUR][1000 genomes]
rs6465100	0.82[EUR][1000 genomes]
rs6942878	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6952842	0.94[EUR][1000 genomes]
rs6957785	1.00[CEU][hapmap];0.93[TSI][hapmap];0.96[EUR][1000 genomes]
rs6958626	0.87[GIH][hapmap]
rs6975175	0.82[EUR][1000 genomes]
rs6978590	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs757159	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7776634	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs7792031	0.81[CEU][hapmap];0.89[EUR][1000 genomes]
rs7793356	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs7800541	1.00[CEU][hapmap];0.86[TSI][hapmap];0.93[EUR][1000 genomes]
rs7812191	0.84[AMR][1000 genomes]
rs886318	0.87[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025277	chr7:86299224-87206007	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv538999	chr7:86299224-87206007	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv532147	chr7:86299225-87121975	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	nsv1015870	chr7:86490491-86802320	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
5	nsv539000	chr7:86490491-86802320	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
6	nsv527889	chr7:86496042-86832603	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
7	nsv1028503	chr7:86684514-86778047	Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1033834	chr7:86691235-86770796	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv539002	chr7:86691235-86770796	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv1023137	chr7:86725145-86767689	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv1016761	chr7:86758544-86914152	Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:86757800-86758800	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:86757800-86759000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr7:86757800-86759000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr7:86757800-86759200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr7:86757800-86759800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr7:86757800-86759800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr7:86757800-86760200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr7:86758000-86758600	Enhancers	HUVEC	blood vessel
9	chr7:86758000-86760000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr7:86758200-86758600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
11	chr7:86758200-86758800	Flanking Active TSS	H1 Cell Line	embryonic stem cell
12	chr7:86758200-86758800	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
13	chr7:86758200-86758800	Flanking Active TSS	K562	blood
14	chr7:86758200-86759000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
15	chr7:86758200-86759000	Enhancers	Fetal Intestine Small	intestine
16	chr7:86758200-86759200	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
17	chr7:86758200-86759400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr7:86758200-86759400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
19	chr7:86758200-86759400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
20	chr7:86758400-86758600	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
21	chr7:86758400-86758600	Enhancers	H9 Cell Line	embryonic stem cell
22	chr7:86758400-86758600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr7:86758400-86758600	Active TSS	iPS-20b Cell Line	embryonic stem cell
24	chr7:86758400-86758600	Enhancers	Spleen	Spleen
25	chr7:86758400-86758800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr7:86758400-86760000	Flanking Active TSS	GM12878-XiMat	blood

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