Variant report

Variant	rs10244629
Chromosome Location	chr7:70639441-70639442
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1002731	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs1002732	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs1002733	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs10081304	0.86[ASN][1000 genomes]
rs10256533	0.81[EUR][1000 genomes]
rs10266269	0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10268304	0.82[EUR][1000 genomes]
rs10271414	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs10272163	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs10277269	1.00[CEU][hapmap]
rs1615456	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs1636477	0.82[EUR][1000 genomes]
rs1636478	1.00[CEU][hapmap]
rs1636479	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs1636480	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs1636481	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs17520733	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs1796057	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs1796083	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs1796084	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs1796087	0.82[EUR][1000 genomes]
rs1796088	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs1796089	0.85[CEU][hapmap]
rs2014091	0.82[EUR][1000 genomes]
rs2158733	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs2707420	0.82[EUR][1000 genomes]
rs2707421	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs3973935	0.84[EUR][1000 genomes]
rs3973936	0.84[EUR][1000 genomes]
rs3973937	0.82[EUR][1000 genomes]
rs4398791	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs4717584	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs4719083	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs4719088	0.96[EUR][1000 genomes]
rs4719089	0.96[EUR][1000 genomes]
rs4719090	0.82[EUR][1000 genomes]
rs6460643	0.82[EUR][1000 genomes]
rs7795127	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1034662	chr7:70275712-70722953	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70612200-70650600	Weak transcription	Fetal Lung	lung
2	chr7:70619800-70641800	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr7:70623000-70639600	Weak transcription	Aorta	Aorta
4	chr7:70631200-70641200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr7:70631200-70641600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr7:70631600-70641800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr7:70631800-70647200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr7:70633000-70641000	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr7:70638000-70639600	Enhancers	Left Ventricle	heart
10	chr7:70638400-70643200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr7:70638800-70639600	Enhancers	Fetal Heart	heart
12	chr7:70639400-70641000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr7:70639400-70641000	Weak transcription	Right Ventricle	heart

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