Variant report

Variant	rs1024669
Chromosome Location	chr17:67065786-67065787
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:67060982..67062981-chr17:67064370..67065901,2	MCF-7	breast:
2	chr17:67064287..67067032-chr17:67070262..67072180,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1024668	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10491178	0.85[GIH][hapmap]
rs11656320	0.81[MEX][hapmap];0.87[TSI][hapmap]
rs12103556	0.85[GIH][hapmap]
rs1468514	0.81[MEX][hapmap];0.87[TSI][hapmap]
rs16973562	0.85[JPT][hapmap]
rs16973722	1.00[GIH][hapmap]
rs1860120	0.84[JPT][hapmap]
rs1860447	0.87[TSI][hapmap]
rs1860448	0.87[TSI][hapmap];0.86[EUR][1000 genomes]
rs2041320	0.86[EUR][1000 genomes]
rs2159434	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2233767	0.85[GIH][hapmap]
rs2286419	0.83[AMR][1000 genomes]
rs2886048	0.81[MEX][hapmap];0.87[TSI][hapmap]
rs35991088	0.85[GIH][hapmap]
rs41496448	0.85[GIH][hapmap]
rs4968989	0.86[EUR][1000 genomes]
rs4968994	0.87[TSI][hapmap];0.84[EUR][1000 genomes]
rs6501957	0.87[TSI][hapmap]
rs6502001	0.87[TSI][hapmap]
rs6502005	0.81[MEX][hapmap]
rs7209351	0.81[MEX][hapmap];0.87[TSI][hapmap]
rs7210174	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7212490	0.87[TSI][hapmap];0.84[EUR][1000 genomes]
rs7212506	0.81[MEX][hapmap]
rs732010	0.87[TSI][hapmap]
rs758255	1.00[GIH][hapmap];0.87[TSI][hapmap];0.89[EUR][1000 genomes]
rs8067965	0.81[MEX][hapmap]
rs8068468	0.85[GIH][hapmap]
rs9282554	0.87[MEX][hapmap]
rs9303011	0.80[EUR][1000 genomes]
rs9916644	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067334	chr17:66695039-67221585	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv543411	chr17:66695039-67221585	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv833526	chr17:66980758-67137034	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1066998	chr17:67060038-67090475	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv908705	chr17:67061898-67112456	Weak transcription Enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:67041400-67072600	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr17:67053800-67066800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr17:67056200-67075200	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr17:67057800-67077600	Weak transcription	Fetal Brain Male	brain
5	chr17:67058200-67066600	Weak transcription	Fetal Lung	lung
6	chr17:67058400-67071600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr17:67059600-67069600	Weak transcription	Adipose Nuclei	Adipose
8	chr17:67060000-67070000	Weak transcription	Ovary	ovary
9	chr17:67062800-67066600	Weak transcription	Fetal Thymus	thymus
10	chr17:67062800-67066800	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr17:67062800-67075800	Weak transcription	Left Ventricle	heart
12	chr17:67063000-67066600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr17:67063200-67066600	Weak transcription	Primary B cells from peripheral blood	blood
14	chr17:67063200-67067000	Weak transcription	Dnd41	blood
15	chr17:67063200-67067400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr17:67063400-67070200	Enhancers	HepG2	liver
17	chr17:67063600-67066400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr17:67063600-67070600	Weak transcription	Liver	Liver
19	chr17:67064000-67065800	Enhancers	Stomach Mucosa	stomach
20	chr17:67064200-67066600	Weak transcription	K562	blood
21	chr17:67064600-67066800	Weak transcription	Primary hematopoietic stem cells	blood
22	chr17:67065000-67066400	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr17:67065000-67066600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr17:67065200-67065800	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr17:67065200-67066200	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr17:67065200-67066200	Enhancers	iPS-18 Cell Line	embryonic stem cell
27	chr17:67065200-67066600	Weak transcription	Primary T cells from cord blood	blood
28	chr17:67065400-67065800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr17:67065400-67065800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr17:67065400-67065800	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chr17:67065400-67065800	Enhancers	iPS-15b Cell Line	embryonic stem cell
32	chr17:67065400-67065800	Enhancers	iPS-20b Cell Line	embryonic stem cell
33	chr17:67065400-67065800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr17:67065400-67065800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr17:67065400-67065800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
36	chr17:67065400-67065800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr17:67065400-67065800	Enhancers	Brain Cingulate Gyrus	brain
38	chr17:67065400-67066000	Enhancers	HUES6 Cell Line	embryonic stem cell
39	chr17:67065400-67066000	Enhancers	NHDF-Ad	bronchial
40	chr17:67065400-67066600	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr17:67065400-67066800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr17:67065600-67065800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
43	chr17:67065600-67065800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr17:67065600-67066000	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr17:67065600-67066600	Weak transcription	Spleen	Spleen
46	chr17:67065600-67066800	Weak transcription	Lung	lung
47	chr17:67065600-67067000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
48	chr17:67065600-67076400	Weak transcription	Esophagus	oesophagus
49	chr17:67065600-67088600	Weak transcription	Pancreas	Pancrea

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