Variant report

Variant	rs732010
Chromosome Location	chr17:67042740-67042741
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:67037977..67039596-chr17:67041233..67043972,2	K562	blood:
2	chr17:67042180..67045074-chr17:67080026..67082668,2	K562	blood:
3	chr17:67037977..67039650-chr17:67041233..67043368,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1055448	1.00[CEU][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10852783	1.00[CEU][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs11077910	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11650025	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1860447	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1860448	1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs2041320	0.89[EUR][1000 genomes]
rs2364312	0.85[EUR][1000 genomes]
rs2364314	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4968831	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4968989	0.89[EUR][1000 genomes]
rs4968990	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4968994	1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs6501957	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7212490	1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs9284343	1.00[CEU][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9902504	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067334	chr17:66695039-67221585	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv543411	chr17:66695039-67221585	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv833526	chr17:66980758-67137034	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:67000200-67044200	Weak transcription	Right Ventricle	heart
2	chr17:67008400-67044000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr17:67009200-67043200	Weak transcription	Pancreas	Pancrea
4	chr17:67009400-67044000	Weak transcription	Colon Smooth Muscle	Colon
5	chr17:67014000-67044200	Weak transcription	Psoas Muscle	Psoas
6	chr17:67024200-67043200	Weak transcription	Fetal Lung	lung
7	chr17:67036800-67043200	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr17:67038800-67043200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr17:67038800-67043200	Weak transcription	Duodenum Mucosa	Duodenum
10	chr17:67039000-67043200	Weak transcription	Small Intestine	intestine
11	chr17:67039400-67043400	Weak transcription	Fetal Stomach	stomach
12	chr17:67039400-67043800	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr17:67039600-67042800	Weak transcription	Hela-S3	cervix
14	chr17:67039600-67043200	Weak transcription	Left Ventricle	heart
15	chr17:67039600-67043800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr17:67039600-67044000	Weak transcription	Gastric	stomach
17	chr17:67039800-67051800	Weak transcription	Fetal Muscle Trunk	muscle
18	chr17:67040000-67043200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr17:67040000-67044000	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr17:67040200-67043200	Weak transcription	Fetal Muscle Leg	muscle
21	chr17:67040400-67047600	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr17:67040800-67055600	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr17:67041200-67043200	Weak transcription	Ovary	ovary
24	chr17:67041400-67043200	Weak transcription	Adipose Nuclei	Adipose
25	chr17:67041400-67043200	Weak transcription	Liver	Liver
26	chr17:67041400-67046200	Enhancers	HUVEC	blood vessel
27	chr17:67041400-67072600	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr17:67041600-67043200	Enhancers	HepG2	liver
29	chr17:67041600-67043200	Weak transcription	NHDF-Ad	bronchial
30	chr17:67042000-67042800	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr17:67042200-67043200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr17:67042200-67043200	Enhancers	Monocytes-CD14+_RO01746	blood
33	chr17:67042400-67043200	Enhancers	Rectal Mucosa Donor 31	rectum
34	chr17:67042400-67043400	Enhancers	Primary neutrophils fromperipheralblood	blood
35	chr17:67042400-67043600	Enhancers	Primary hematopoietic stem cells short term culture	blood
36	chr17:67042400-67044400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr17:67042400-67044800	Enhancers	Placenta	Placenta
38	chr17:67042400-67045600	Enhancers	Primary monocytes fromperipheralblood	blood
39	chr17:67042400-67045600	Enhancers	Fetal Intestine Small	intestine
40	chr17:67042400-67046200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
41	chr17:67042400-67046200	Enhancers	Fetal Intestine Large	intestine
42	chr17:67042600-67043000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr17:67042600-67043000	Weak transcription	Stomach Mucosa	stomach
44	chr17:67042600-67043200	Active TSS	K562	blood

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