Variant report

Variant	rs9284343
Chromosome Location	chr17:67055545-67055546
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:67054448..67056090-chr17:67057770..67060664,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1055448	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10852783	1.00[CEU][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs11077910	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11650025	1.00[CEU][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1860447	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1860448	0.83[EUR][1000 genomes]
rs2041320	0.83[EUR][1000 genomes]
rs2364314	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4968831	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4968989	0.83[EUR][1000 genomes]
rs4968990	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4968994	0.85[EUR][1000 genomes]
rs6501957	1.00[CEU][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7212490	0.85[EUR][1000 genomes]
rs732010	1.00[CEU][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9902504	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067334	chr17:66695039-67221585	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv543411	chr17:66695039-67221585	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv833526	chr17:66980758-67137034	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:67040800-67055600	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr17:67041400-67072600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr17:67044400-67057200	Weak transcription	Fetal Lung	lung
4	chr17:67046200-67057000	Weak transcription	HUVEC	blood vessel
5	chr17:67048400-67057600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr17:67053800-67057000	Weak transcription	Stomach Mucosa	stomach
7	chr17:67053800-67066800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr17:67054600-67055600	Weak transcription	Left Ventricle	heart
9	chr17:67055000-67055600	Transcr. at gene 5' and 3'	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr17:67055000-67056200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr17:67055000-67056200	Flanking Active TSS	Adipose Nuclei	Adipose
12	chr17:67055200-67055800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
13	chr17:67055200-67056200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr17:67055200-67056200	Flanking Active TSS	Ovary	ovary
15	chr17:67055200-67056400	Active TSS	Right Atrium	heart
16	chr17:67055200-67056400	Flanking Active TSS	NHDF-Ad	bronchial
17	chr17:67055400-67055600	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr17:67055400-67055600	Enhancers	Osteobl	bone
19	chr17:67055400-67055800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr17:67055400-67056000	Flanking Active TSS	Fetal Muscle Leg	muscle
21	chr17:67055400-67056200	Active TSS	Stomach Smooth Muscle	stomach
22	chr17:67055400-67057200	Enhancers	Fetal Kidney	kidney
23	chr17:67055400-67058000	Enhancers	Brain Inferior Temporal Lobe	brain
24	chr17:67055400-67058000	Enhancers	Brain Substantia Nigra	brain

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