Variant report

Variant	rs10852783
Chromosome Location	chr17:67043350-67043351
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:67037977..67039596-chr17:67041233..67043972,2	K562	blood:
2	chr17:67042180..67045074-chr17:67080026..67082668,2	K562	blood:
3	chr17:67037977..67039650-chr17:67041233..67043368,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1055448	1.00[CEU][hapmap];0.97[YRI][hapmap];0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11077910	0.86[EUR][1000 genomes]
rs11650025	1.00[CEU][hapmap];0.90[YRI][hapmap];0.86[EUR][1000 genomes]
rs1860447	1.00[CEU][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2364314	0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4968831	0.84[EUR][1000 genomes]
rs4968990	0.82[EUR][1000 genomes]
rs6501957	1.00[CEU][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs70938126	0.84[AMR][1000 genomes]
rs732010	1.00[CEU][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs732012	0.84[AMR][1000 genomes]
rs9284343	1.00[CEU][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9902504	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067334	chr17:66695039-67221585	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv543411	chr17:66695039-67221585	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv833526	chr17:66980758-67137034	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:67000200-67044200	Weak transcription	Right Ventricle	heart
2	chr17:67008400-67044000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr17:67009400-67044000	Weak transcription	Colon Smooth Muscle	Colon
4	chr17:67014000-67044200	Weak transcription	Psoas Muscle	Psoas
5	chr17:67039400-67043400	Weak transcription	Fetal Stomach	stomach
6	chr17:67039400-67043800	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr17:67039600-67043800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr17:67039600-67044000	Weak transcription	Gastric	stomach
9	chr17:67039800-67051800	Weak transcription	Fetal Muscle Trunk	muscle
10	chr17:67040000-67044000	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr17:67040400-67047600	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr17:67040800-67055600	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr17:67041400-67046200	Enhancers	HUVEC	blood vessel
14	chr17:67041400-67072600	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr17:67042400-67043400	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr17:67042400-67043600	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr17:67042400-67044400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr17:67042400-67044800	Enhancers	Placenta	Placenta
19	chr17:67042400-67045600	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr17:67042400-67045600	Enhancers	Fetal Intestine Small	intestine
21	chr17:67042400-67046200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr17:67042400-67046200	Enhancers	Fetal Intestine Large	intestine
23	chr17:67042800-67043800	Enhancers	Hela-S3	cervix
24	chr17:67042800-67044000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr17:67043000-67043600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr17:67043000-67046000	Enhancers	Stomach Mucosa	stomach
27	chr17:67043200-67043400	Flanking Active TSS	Duodenum Mucosa	Duodenum
28	chr17:67043200-67043400	Enhancers	Fetal Lung	lung
29	chr17:67043200-67043400	Enhancers	Lung	lung
30	chr17:67043200-67043400	Enhancers	Ovary	ovary
31	chr17:67043200-67043400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
32	chr17:67043200-67043400	Enhancers	Small Intestine	intestine
33	chr17:67043200-67043600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr17:67043200-67043600	Flanking Active TSS	K562	blood
35	chr17:67043200-67043800	Enhancers	Adipose Nuclei	Adipose
36	chr17:67043200-67044000	Enhancers	Fetal Muscle Leg	muscle
37	chr17:67043200-67044000	Active TSS	Rectal Mucosa Donor 29	rectum
38	chr17:67043200-67044000	Flanking Active TSS	HepG2	liver
39	chr17:67043200-67044200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr17:67043200-67044200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr17:67043200-67044200	Enhancers	Muscle Satellite Cultured Cells	--
42	chr17:67043200-67044200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr17:67043200-67044200	Enhancers	Esophagus	oesophagus
44	chr17:67043200-67044200	Enhancers	Left Ventricle	heart
45	chr17:67043200-67044200	Enhancers	NHLF	lung
46	chr17:67043200-67044400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
47	chr17:67043200-67044400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr17:67043200-67044400	Enhancers	Liver	Liver
49	chr17:67043200-67044600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr17:67043200-67044600	Enhancers	Fetal Heart	heart

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