Variant report

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10951588	0.92[ASN][1000 genomes]
rs1116811	0.85[CEU][hapmap];0.86[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.90[ASN][1000 genomes]
rs1116813	0.81[JPT][hapmap]
rs12532009	0.85[CEU][hapmap];0.86[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12538487	0.82[ASN][1000 genomes]
rs12667652	0.82[ASN][1000 genomes]
rs12674371	0.83[ASN][1000 genomes]
rs12701690	0.81[JPT][hapmap]
rs13234105	0.81[JPT][hapmap]
rs13242896	0.82[ASN][1000 genomes]
rs1358422	0.81[JPT][hapmap]
rs1525798	0.80[CHB][hapmap];0.85[CHD][hapmap]
rs1527949	0.81[JPT][hapmap]
rs1527952	0.80[CHB][hapmap];0.85[CHD][hapmap]
rs17171519	0.87[CHB][hapmap]
rs17171520	0.88[JPT][hapmap]
rs17171521	0.81[JPT][hapmap]
rs34099272	0.90[ASN][1000 genomes]
rs35787066	0.81[JPT][hapmap]
rs59514011	0.92[ASN][1000 genomes]
rs62442164	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6462886	0.87[CHB][hapmap];0.90[CHD][hapmap];0.81[ASN][1000 genomes]
rs6462887	0.81[ASN][1000 genomes]
rs6944670	0.87[CHB][hapmap];0.90[CHD][hapmap]
rs6945380	0.80[CHB][hapmap];0.85[CHD][hapmap]
rs6952464	0.87[CHB][hapmap];0.90[CHD][hapmap];0.83[ASN][1000 genomes]
rs6974522	0.87[CHB][hapmap];0.82[ASN][1000 genomes]
rs7779583	0.90[ASN][1000 genomes]
rs7779853	0.85[CEU][hapmap];0.86[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.90[ASN][1000 genomes]
rs7801660	0.87[CHB][hapmap];0.90[CHD][hapmap];0.82[ASN][1000 genomes]
rs940876	0.80[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024142	chr7:38978728-39300444	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv887967	chr7:39009307-39090698	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv275166	chr7:39077397-39081494	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10248136	TRPM2	trans	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39072400-39083200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr7:39075800-39078600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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