Variant report

Variant	rs1525798
Chromosome Location	chr7:39112580-39112581
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:39109858..39114276-chr7:39116660..39120717,5	K562	blood:
2	chr7:39103596..39105131-chr7:39111658..39114423,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10248136	0.80[CHB][hapmap];0.85[CHD][hapmap]
rs10464366	0.86[CEU][hapmap];0.94[CHB][hapmap];0.83[CHD][hapmap];0.84[EUR][1000 genomes]
rs10464368	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10951593	0.86[CEU][hapmap];0.94[CHB][hapmap];0.84[EUR][1000 genomes]
rs1116811	0.80[CHB][hapmap];0.81[CHD][hapmap]
rs11765705	0.91[CEU][hapmap];0.94[CHB][hapmap];0.83[CHD][hapmap];0.83[GIH][hapmap]
rs11973171	0.82[CHB][hapmap]
rs12532009	0.80[CHB][hapmap];0.81[CHD][hapmap]
rs12667577	0.82[EUR][1000 genomes]
rs12667652	0.86[CHB][hapmap]
rs12669446	0.82[CHB][hapmap]
rs12670003	0.82[CHB][hapmap]
rs12671046	0.82[CHB][hapmap]
rs13242209	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1527952	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17171519	0.94[CHB][hapmap]
rs2392618	0.85[EUR][1000 genomes]
rs4723819	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6462886	0.94[CHB][hapmap]
rs6944670	0.94[CHB][hapmap]
rs6945380	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6952464	0.94[CHB][hapmap]
rs6957662	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6974522	0.94[CHB][hapmap]
rs6979210	0.91[CEU][hapmap];0.94[CHB][hapmap]
rs7779853	0.80[CHB][hapmap];0.81[CHD][hapmap]
rs7785889	0.85[CHB][hapmap];0.92[JPT][hapmap]
rs7801660	0.94[CHB][hapmap]
rs885352	0.95[CEU][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024142	chr7:38978728-39300444	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39109000-39112600	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr7:39109200-39112600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr7:39109600-39113800	Weak transcription	Placenta	Placenta
4	chr7:39111600-39112600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:39111800-39113200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr7:39111800-39113600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr7:39112000-39112600	Active TSS	Fetal Brain Male	brain
8	chr7:39112000-39112800	Enhancers	Pancreatic Islets	Pancreatic Islet
9	chr7:39112000-39113200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr7:39112000-39113800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr7:39112200-39113600	Enhancers	Brain Germinal Matrix	brain
12	chr7:39112200-39114400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr7:39112400-39113400	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr7:39112400-39113400	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr7:39112400-39113600	Enhancers	Brain Cingulate Gyrus	brain
16	chr7:39112400-39113600	Enhancers	Fetal Lung	lung

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