Variant report

Variant	rs12669446
Chromosome Location	chr7:39046908-39046909
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11973171	0.82[CEU][hapmap]
rs12667652	1.00[CEU][hapmap]
rs12670003	0.82[CEU][hapmap]
rs12671046	0.83[CEU][hapmap];0.82[GIH][hapmap]
rs1525798	0.82[CHB][hapmap]
rs1527952	0.82[CHB][hapmap]
rs17171519	0.96[CEU][hapmap];0.88[CHB][hapmap]
rs2696187	0.86[ASN][1000 genomes]
rs3930047	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6462886	0.96[CEU][hapmap];0.88[CHB][hapmap];0.95[MEX][hapmap];0.95[MKK][hapmap];0.83[TSI][hapmap]
rs6944670	0.84[ASW][hapmap];0.91[CEU][hapmap];0.88[CHB][hapmap];0.92[GIH][hapmap];0.90[MEX][hapmap];0.97[MKK][hapmap];0.81[TSI][hapmap]
rs6945380	0.82[CHB][hapmap]
rs6952464	0.96[CEU][hapmap];0.88[CHB][hapmap];0.95[MEX][hapmap];0.95[MKK][hapmap];0.85[TSI][hapmap]
rs6974522	0.96[CEU][hapmap];0.88[CHB][hapmap]
rs7801660	0.85[ASW][hapmap];0.96[CEU][hapmap];0.88[CHB][hapmap];0.84[GIH][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.88[TSI][hapmap]
rs940876	0.82[CHB][hapmap];0.89[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830967	chr7:38913837-39069253	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1024142	chr7:38978728-39300444	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv887967	chr7:39009307-39090698	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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