Variant report

Variant	rs12670003
Chromosome Location	chr7:39083653-39083654
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:39077523..39079724-chr7:39083023..39084974,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1000869	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10464366	0.88[CHB][hapmap]
rs10951590	0.84[ASN][1000 genomes]
rs10951593	0.88[CHB][hapmap]
rs1116811	0.82[CHB][hapmap]
rs11765705	0.88[CHB][hapmap]
rs11972294	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11973171	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12532009	0.82[CHB][hapmap]
rs12538487	0.86[ASN][1000 genomes]
rs12667577	0.84[ASN][1000 genomes]
rs12667652	0.90[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs12669446	0.82[CEU][hapmap]
rs12671046	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12674371	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12701691	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13242896	0.86[ASN][1000 genomes]
rs1525798	0.82[CHB][hapmap]
rs1527952	0.82[CHB][hapmap]
rs17171519	0.87[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs6462886	0.87[CEU][hapmap];0.88[CHB][hapmap];0.95[JPT][hapmap];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6462887	0.84[ASN][1000 genomes]
rs6944670	0.82[CEU][hapmap];0.88[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs6945380	0.82[CHB][hapmap]
rs6952464	0.87[CEU][hapmap];0.88[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6974522	0.87[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs6979210	0.81[CHB][hapmap]
rs7779853	0.82[CHB][hapmap]
rs7801660	0.87[CEU][hapmap];0.88[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024142	chr7:38978728-39300444	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv887967	chr7:39009307-39090698	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39082400-39094000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:39082600-39089800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr7:39083400-39084400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr7:39083400-39091600	Weak transcription	Aorta	Aorta

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