Variant report

Variant	rs10464366
Chromosome Location	chr7:39121500-39121501
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10464368	0.85[EUR][1000 genomes]
rs10951593	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11765705	0.91[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap]
rs11973171	0.88[CHB][hapmap]
rs12667577	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12670003	0.88[CHB][hapmap]
rs12671046	0.88[CHB][hapmap];0.90[CHD][hapmap];0.81[MEX][hapmap]
rs12672089	0.81[YRI][hapmap]
rs12674262	0.81[YRI][hapmap]
rs13242209	0.83[EUR][1000 genomes]
rs1525798	0.86[CEU][hapmap];0.94[CHB][hapmap];0.83[CHD][hapmap];0.84[EUR][1000 genomes]
rs1527952	0.90[CEU][hapmap];0.94[CHB][hapmap];0.83[CHD][hapmap];0.85[EUR][1000 genomes]
rs17171519	0.87[CHB][hapmap]
rs17171537	0.80[ASW][hapmap];0.91[LWK][hapmap]
rs2392618	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4355688	0.82[ASW][hapmap];0.92[LWK][hapmap]
rs4723819	0.84[EUR][1000 genomes]
rs6462886	0.87[CHB][hapmap]
rs6944670	0.87[CHB][hapmap]
rs6945380	0.86[CEU][hapmap];0.94[CHB][hapmap];0.83[CHD][hapmap];0.84[EUR][1000 genomes]
rs6952464	0.87[CHB][hapmap]
rs6952466	0.82[ASW][hapmap];0.92[LWK][hapmap]
rs6957662	0.83[EUR][1000 genomes]
rs6974522	0.87[CHB][hapmap]
rs6979210	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs7801660	0.87[CHB][hapmap]
rs885352	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024142	chr7:38978728-39300444	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
IgG glycosylation	23382691	GWAS catalog

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39113600-39123400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:39115600-39125200	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr7:39120400-39123600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr7:39121400-39123200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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