Variant report

Variant	rs10248300
Chromosome Location	chr7:12045992-12045993
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10224517	1.00[EUR][1000 genomes]
rs10224879	1.00[EUR][1000 genomes]
rs10230214	1.00[EUR][1000 genomes]
rs10234847	1.00[EUR][1000 genomes]
rs10237705	1.00[EUR][1000 genomes]
rs10241052	1.00[EUR][1000 genomes]
rs10242456	1.00[EUR][1000 genomes]
rs10243371	1.00[EUR][1000 genomes]
rs10254552	1.00[EUR][1000 genomes]
rs10254644	1.00[EUR][1000 genomes]
rs10262186	1.00[EUR][1000 genomes]
rs10262661	1.00[EUR][1000 genomes]
rs10269461	1.00[EUR][1000 genomes]
rs10270591	1.00[EUR][1000 genomes]
rs10270750	1.00[EUR][1000 genomes]
rs10273844	1.00[EUR][1000 genomes]
rs10274633	1.00[EUR][1000 genomes]
rs10275836	1.00[EUR][1000 genomes]
rs10277752	1.00[EUR][1000 genomes]
rs10488200	1.00[EUR][1000 genomes]
rs10488201	1.00[EUR][1000 genomes]
rs10488202	1.00[EUR][1000 genomes]
rs10488203	1.00[EUR][1000 genomes]
rs10488205	1.00[EUR][1000 genomes]
rs17165572	1.00[EUR][1000 genomes]
rs17165583	1.00[EUR][1000 genomes]
rs17165585	1.00[EUR][1000 genomes]
rs17165586	1.00[EUR][1000 genomes]
rs17165587	1.00[EUR][1000 genomes]
rs17165589	1.00[EUR][1000 genomes]
rs17165590	1.00[EUR][1000 genomes]
rs17165591	1.00[EUR][1000 genomes]
rs17165602	1.00[EUR][1000 genomes]
rs17165605	1.00[EUR][1000 genomes]
rs17165607	1.00[EUR][1000 genomes]
rs17165608	1.00[EUR][1000 genomes]
rs17165609	1.00[EUR][1000 genomes]
rs17165617	1.00[EUR][1000 genomes]
rs17165620	1.00[EUR][1000 genomes]
rs17165621	1.00[EUR][1000 genomes]
rs17165622	1.00[EUR][1000 genomes]
rs17165647	1.00[EUR][1000 genomes]
rs2110714	1.00[EUR][1000 genomes]
rs28452368	1.00[EUR][1000 genomes]
rs28750387	1.00[EUR][1000 genomes]
rs28829942	1.00[EUR][1000 genomes]
rs4721033	1.00[EUR][1000 genomes]
rs4721034	1.00[EUR][1000 genomes]
rs6460858	1.00[EUR][1000 genomes]
rs73285074	1.00[EUR][1000 genomes]
rs73285075	1.00[EUR][1000 genomes]
rs73285077	1.00[EUR][1000 genomes]
rs73285079	1.00[EUR][1000 genomes]
rs73285081	1.00[EUR][1000 genomes]
rs73285087	1.00[EUR][1000 genomes]
rs73285088	1.00[EUR][1000 genomes]
rs73285090	1.00[EUR][1000 genomes]
rs73285092	1.00[EUR][1000 genomes]
rs73287176	1.00[EUR][1000 genomes]
rs73287204	1.00[EUR][1000 genomes]
rs73287207	1.00[EUR][1000 genomes]
rs73287215	1.00[EUR][1000 genomes]
rs73287282	1.00[EUR][1000 genomes]
rs73287290	1.00[EUR][1000 genomes]
rs73287292	1.00[EUR][1000 genomes]
rs73287297	1.00[EUR][1000 genomes]
rs73292721	1.00[EUR][1000 genomes]
rs7777276	1.00[EUR][1000 genomes]
rs7779211	1.00[EUR][1000 genomes]
rs7783187	1.00[EUR][1000 genomes]
rs7790766	1.00[EUR][1000 genomes]
rs7791073	1.00[EUR][1000 genomes]
rs7791085	1.00[EUR][1000 genomes]
rs7796388	1.00[EUR][1000 genomes]
rs7799871	1.00[EUR][1000 genomes]
rs7800268	1.00[EUR][1000 genomes]
rs7800415	1.00[EUR][1000 genomes]
rs7800416	1.00[EUR][1000 genomes]
rs7807215	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606199	chr7:11506143-12486659	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv887614	chr7:11778424-12211198	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv2758103	chr7:11927239-12109419	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2759510	chr7:11927239-12109419	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv887625	chr7:11981995-12046503	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
6	nsv830906	chr7:12001764-12177869	Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv606222	chr7:12023864-12084381	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:12045000-12048400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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