Variant report

Variant	rs6460858
Chromosome Location	chr7:12009773-12009774
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10224517	1.00[EUR][1000 genomes]
rs10224879	1.00[EUR][1000 genomes]
rs10230214	1.00[EUR][1000 genomes]
rs10234847	1.00[EUR][1000 genomes]
rs10237705	1.00[EUR][1000 genomes]
rs10241052	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10242456	1.00[EUR][1000 genomes]
rs10243371	1.00[EUR][1000 genomes]
rs10248300	1.00[EUR][1000 genomes]
rs10254552	1.00[EUR][1000 genomes]
rs10254644	1.00[EUR][1000 genomes]
rs10262186	1.00[EUR][1000 genomes]
rs10262661	1.00[EUR][1000 genomes]
rs10269461	1.00[EUR][1000 genomes]
rs10270591	1.00[EUR][1000 genomes]
rs10270750	1.00[EUR][1000 genomes]
rs10273844	1.00[EUR][1000 genomes]
rs10274633	1.00[EUR][1000 genomes]
rs10275836	1.00[EUR][1000 genomes]
rs10277749	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10277752	1.00[EUR][1000 genomes]
rs10488205	1.00[EUR][1000 genomes]
rs13437920	1.00[EUR][1000 genomes]
rs17165572	1.00[EUR][1000 genomes]
rs17165583	1.00[EUR][1000 genomes]
rs17165585	1.00[EUR][1000 genomes]
rs17165586	1.00[EUR][1000 genomes]
rs17165587	1.00[EUR][1000 genomes]
rs17165589	1.00[EUR][1000 genomes]
rs17165590	1.00[EUR][1000 genomes]
rs17165591	1.00[EUR][1000 genomes]
rs17165602	1.00[EUR][1000 genomes]
rs17165605	1.00[EUR][1000 genomes]
rs17165607	1.00[EUR][1000 genomes]
rs2110714	1.00[EUR][1000 genomes]
rs28431052	1.00[EUR][1000 genomes]
rs28452368	1.00[EUR][1000 genomes]
rs28750387	1.00[EUR][1000 genomes]
rs28829942	1.00[EUR][1000 genomes]
rs4721033	1.00[EUR][1000 genomes]
rs4721034	1.00[EUR][1000 genomes]
rs73285074	1.00[EUR][1000 genomes]
rs73285075	1.00[EUR][1000 genomes]
rs73285077	1.00[EUR][1000 genomes]
rs73285079	1.00[EUR][1000 genomes]
rs73285081	1.00[EUR][1000 genomes]
rs73285087	1.00[EUR][1000 genomes]
rs73285088	1.00[EUR][1000 genomes]
rs73285090	1.00[EUR][1000 genomes]
rs73285092	1.00[EUR][1000 genomes]
rs73287176	1.00[EUR][1000 genomes]
rs73287204	1.00[EUR][1000 genomes]
rs73287207	1.00[EUR][1000 genomes]
rs73287215	1.00[EUR][1000 genomes]
rs73287282	1.00[EUR][1000 genomes]
rs73287290	1.00[EUR][1000 genomes]
rs73287292	1.00[EUR][1000 genomes]
rs73287297	1.00[EUR][1000 genomes]
rs73292721	1.00[EUR][1000 genomes]
rs7777276	1.00[EUR][1000 genomes]
rs7779211	1.00[EUR][1000 genomes]
rs7783187	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7790766	1.00[EUR][1000 genomes]
rs7791073	1.00[EUR][1000 genomes]
rs7791085	1.00[EUR][1000 genomes]
rs7796388	1.00[EUR][1000 genomes]
rs7799871	1.00[EUR][1000 genomes]
rs7800268	1.00[EUR][1000 genomes]
rs7800415	1.00[EUR][1000 genomes]
rs7800416	1.00[EUR][1000 genomes]
rs7807215	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606199	chr7:11506143-12486659	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv887614	chr7:11778424-12211198	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv887619	chr7:11893588-12043231	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2758103	chr7:11927239-12109419	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2759510	chr7:11927239-12109419	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv887624	chr7:11941048-12023864	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv464370	chr7:11975557-12010797	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
8	nsv606219	chr7:11975557-12010797	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
9	nsv887625	chr7:11981995-12046503	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
10	esv2761085	chr7:12001136-12010002	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
11	nsv830906	chr7:12001764-12177869	Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv2531786	chr7:12002569-12011163	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
13	esv2021986	chr7:12003127-12010762	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
14	esv2522632	chr7:12003138-12011904	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
15	esv3475633	chr7:12003179-12010738	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
16	esv3475630	chr7:12003233-12010674	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
17	esv3475632	chr7:12003240-12010643	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
18	esv3475634	chr7:12003307-12010581	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
19	esv11448	chr7:12003338-12010123	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
20	nsv515497	chr7:12003416-12009954	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
21	esv2422073	chr7:12003416-12010002	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
22	nsv519162	chr7:12003416-12014261	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
23	nsv818481	chr7:12003416-12023864	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:12008600-12009800	Enhancers	Pancreatic Islets	Pancreatic Islet
2	chr7:12009000-12009800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr7:12009200-12010000	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr7:12009200-12010200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr7:12009400-12009800	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr7:12009400-12010200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr7:12009600-12010400	Enhancers	Rectal Mucosa Donor 31	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links