Variant report

Variant	rs28431052
Chromosome Location	chr7:11887441-11887442
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10224879	1.00[EUR][1000 genomes]
rs10230214	1.00[EUR][1000 genomes]
rs10234847	1.00[EUR][1000 genomes]
rs10237705	1.00[EUR][1000 genomes]
rs10241052	1.00[EUR][1000 genomes]
rs10242456	1.00[EUR][1000 genomes]
rs10245735	1.00[EUR][1000 genomes]
rs10254552	1.00[EUR][1000 genomes]
rs10254644	1.00[EUR][1000 genomes]
rs10262186	1.00[EUR][1000 genomes]
rs10262283	1.00[EUR][1000 genomes]
rs10262661	1.00[EUR][1000 genomes]
rs10269461	1.00[EUR][1000 genomes]
rs10270591	1.00[EUR][1000 genomes]
rs10270750	1.00[EUR][1000 genomes]
rs10271381	1.00[EUR][1000 genomes]
rs10273844	1.00[EUR][1000 genomes]
rs10274633	1.00[EUR][1000 genomes]
rs10275836	1.00[EUR][1000 genomes]
rs10277752	1.00[EUR][1000 genomes]
rs13437920	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28452368	1.00[EUR][1000 genomes]
rs28690272	1.00[EUR][1000 genomes]
rs28712322	1.00[EUR][1000 genomes]
rs28750387	1.00[EUR][1000 genomes]
rs28829942	1.00[EUR][1000 genomes]
rs57993664	1.00[EUR][1000 genomes]
rs6460858	1.00[EUR][1000 genomes]
rs73285074	1.00[EUR][1000 genomes]
rs73285075	1.00[EUR][1000 genomes]
rs73285077	1.00[EUR][1000 genomes]
rs73285079	1.00[EUR][1000 genomes]
rs73285081	1.00[EUR][1000 genomes]
rs73285087	1.00[EUR][1000 genomes]
rs73285088	1.00[EUR][1000 genomes]
rs73285090	1.00[EUR][1000 genomes]
rs73285092	1.00[EUR][1000 genomes]
rs73287204	1.00[EUR][1000 genomes]
rs73287207	1.00[EUR][1000 genomes]
rs73287215	1.00[EUR][1000 genomes]
rs73287282	1.00[EUR][1000 genomes]
rs73287290	1.00[EUR][1000 genomes]
rs73287292	1.00[EUR][1000 genomes]
rs73287297	1.00[EUR][1000 genomes]
rs73292721	1.00[EUR][1000 genomes]
rs7779211	1.00[EUR][1000 genomes]
rs7783187	1.00[EUR][1000 genomes]
rs7796388	1.00[EUR][1000 genomes]
rs7799871	1.00[EUR][1000 genomes]
rs7800268	1.00[EUR][1000 genomes]
rs7800415	1.00[EUR][1000 genomes]
rs7800416	1.00[EUR][1000 genomes]
rs9692272	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606199	chr7:11506143-12486659	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv887614	chr7:11778424-12211198	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv830905	chr7:11793513-11941594	Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv606203	chr7:11870711-11915630	Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv887615	chr7:11870711-11938060	Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv519418	chr7:11884682-11900479	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
7	nsv464368	chr7:11884682-11920546	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv606204	chr7:11884682-11920546	Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv887616	chr7:11884682-11931567	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv887617	chr7:11884682-11938060	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:11885600-11888200	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr7:11885800-11888200	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr7:11886000-11887600	Enhancers	Fetal Brain Male	brain
4	chr7:11886000-11890800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr7:11886400-11889000	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr7:11886400-11889000	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr7:11886400-11890400	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr7:11886600-11887600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr7:11886600-11889000	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr7:11887000-11888000	Active TSS	A549	lung
11	chr7:11887000-11889000	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr7:11887200-11888000	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr7:11887200-11888000	Active TSS	Fetal Lung	lung
14	chr7:11887400-11887800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr7:11887400-11888600	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr7:11887400-11890200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr7:11887400-11890400	Enhancers	iPS-20b Cell Line	embryonic stem cell

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