Variant report

Variant	rs57993664
Chromosome Location	chr7:11789336-11789337
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10229322	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10229785	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10231554	1.00[AMR][1000 genomes]
rs10231987	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10237471	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10241394	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10242153	1.00[AMR][1000 genomes]
rs10242780	1.00[AMR][1000 genomes]
rs10245735	1.00[EUR][1000 genomes]
rs10246079	1.00[AMR][1000 genomes]
rs10248531	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10254644	1.00[EUR][1000 genomes]
rs10255826	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10258598	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10262283	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10268804	1.00[EUR][1000 genomes]
rs10270750	1.00[EUR][1000 genomes]
rs10271381	1.00[EUR][1000 genomes]
rs10273844	1.00[EUR][1000 genomes]
rs10280252	1.00[AMR][1000 genomes]
rs11979880	1.00[EUR][1000 genomes]
rs13437920	1.00[EUR][1000 genomes]
rs28409613	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28414693	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28431052	1.00[EUR][1000 genomes]
rs28479746	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28609564	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28690272	1.00[EUR][1000 genomes]
rs28712322	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58204711	1.00[AMR][1000 genomes]
rs58678528	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60309391	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6950525	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6963014	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6970485	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9692272	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606199	chr7:11506143-12486659	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv887612	chr7:11756776-11806289	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv887613	chr7:11766964-11806289	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv887614	chr7:11778424-12211198	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv970796	chr7:11787992-11794418	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:11783000-11793000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr7:11788800-11791600	Enhancers	Placenta	Placenta
3	chr7:11789000-11789400	Enhancers	Stomach Mucosa	stomach
4	chr7:11789000-11790200	Active TSS	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links