Variant report

Variant	rs10231987
Chromosome Location	chr7:11795912-11795913
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10226967	0.89[AFR][1000 genomes]
rs10229322	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10229785	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10231554	1.00[AMR][1000 genomes]
rs10237471	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10241394	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10242153	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10242780	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10246079	1.00[AMR][1000 genomes]
rs10248531	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10255826	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10258598	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10262283	0.80[AFR][1000 genomes]
rs10280252	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28409613	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28414693	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28479746	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28609564	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28712322	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57993664	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58204711	1.00[AMR][1000 genomes]
rs58678528	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60309391	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6950525	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6963014	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6970485	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606199	chr7:11506143-12486659	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv887612	chr7:11756776-11806289	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv887613	chr7:11766964-11806289	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv887614	chr7:11778424-12211198	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv830905	chr7:11793513-11941594	Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:11794800-11796400	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr7:11795400-11798000	Weak transcription	Placenta	Placenta
3	chr7:11795800-11796800	Active TSS	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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