Variant report

Variant	rs10242780
Chromosome Location	chr7:11805107-11805108
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10226967	0.85[AFR][1000 genomes]
rs10229322	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10229785	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10231554	1.00[AMR][1000 genomes]
rs10231987	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10237471	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10241394	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10242153	1.00[AMR][1000 genomes]
rs10246079	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10248531	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10255826	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10258598	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10280252	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28409613	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28414693	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28479746	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28609564	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28712322	1.00[AMR][1000 genomes]
rs57993664	1.00[AMR][1000 genomes]
rs58204711	1.00[AMR][1000 genomes]
rs58678528	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60309391	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6950525	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6963014	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6970485	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606199	chr7:11506143-12486659	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv887612	chr7:11756776-11806289	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv887613	chr7:11766964-11806289	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv887614	chr7:11778424-12211198	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv830905	chr7:11793513-11941594	Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:11800400-11811200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr7:11803000-11805800	Weak transcription	A549	lung
3	chr7:11805000-11805200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links