Variant report
| Variant | rs6970485 |
|---|---|
| Chromosome Location | chr7:11786179-11786180 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10226967 | 0.92[AFR][1000 genomes] |
| rs10229322 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10229785 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10231554 | 1.00[AMR][1000 genomes] |
| rs10231987 | 0.93[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10237471 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10241394 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10242153 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10242780 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10246079 | 1.00[AMR][1000 genomes] |
| rs10248531 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10255826 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10258598 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10262283 | 0.83[AFR][1000 genomes] |
| rs10280252 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28409613 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28414693 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28479746 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28609564 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28712322 | 1.00[AMR][1000 genomes] |
| rs57993664 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58204711 | 1.00[AMR][1000 genomes] |
| rs58678528 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60309391 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6950525 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6963014 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv606199 | chr7:11506143-12486659 | Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 20 gene(s) | inside rSNPs | diseases |
| 2 | nsv433029 | chr7:11753260-11787060 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv887612 | chr7:11756776-11806289 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv887613 | chr7:11766964-11806289 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv887614 | chr7:11778424-12211198 | Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:11783000-11793000 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
| 2 | chr7:11785800-11786400 | ZNF genes & repeats | A549 | lung |
